Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1129 ATGGGTCGTACTGGATCCAGAGGGCAGGTGACTGAAGTCAGAGTTAAGTTTTTGGATGACCAGAATCATCACATCATGAGGAATGTGAAAGGTTCAGTGAGGGACCACATTCTCACCCTTCTTGAGTCTGAAAGAGAAGCCAGAAGGTTGCCCTAG 156 0.4744 MGRTGSRGQVTEVRVKFLDDQNHHIMRNVKGSVRDHILTLLESEREARRLP* 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1129 51 Gene3D - 1 51 IPR012340 -
Lja6g1129 51 Pfam Ribosomal protein S28e 1 50 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lja6g1129 51 PANTHER RIBOSOMAL PROTEIN S28E-RELATED 1 50 - -
Lja6g1129 51 ProSitePatterns Ribosomal protein S28e signature. 42 50 IPR028626 -
Lja6g1129 51 SUPERFAMILY Nucleic acid-binding proteins 1 50 IPR012340 -
Lja6g1129 51 PANTHER 40S RIBOSOMAL PROTEIN S28 1 50 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1129 Lja-Chr6 31889181 31890354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1129 1 50 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 78.431 9.50e-20 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1129 K02979 - gmx:100790570 86.2705