LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g1120	ATGGCAAAAACGACGTCGTTGCTGCTCTGCACAGTGCTTCTCTTCGCAACCCTCGCTCTCATCCAGGCAAAGAAGTCGAAGGAGGATTTGAAGGAAGTGACCCACAAGGTTTTCTTTGATGTTGAGATTGATGGAAAGGCTGCAGGTCGTATCGTAATGGGTCTATATGGGAAGACAGTTCCAGAAACTGCAGAAAACTTCCGAGCTCTTTGCACAGGGGAAAAGGGAATTGGTAAAAGTGGAAAGCCTCTCCATTTCAAAGGTAGTTCATTCCATAGGATTATTCCTAGCTTTATGATCCAAGGAGGTGATTTTACCCAAGGCAATGGAATGGGTGGAGAATCAATTTATGGGGAGAAGTTTCCTGATGAGAACTTCAAGTTAAAGCATACTGGACCAGGACTTCTATCAATGGCAAACGCTGGTCCTGATACCAATGGTTCACAATTTTTCATTACAACTGTGACAACCAGCTGGTTGGATGGAAGGCATGTTGTTTTTGGAAAAGTGCTTTCGGGAATGGATGTTGTTTACAAGATGGAAGCTGAAGGAAACCAAAGTGGAACTCCCAAAAGCAAGGTTGTGATTGCTGACAGCGGTGAACTACCTCTATGA	615	0.4423	MAKTTSLLLCTVLLFATLALIQAKKSKEDLKEVTHKVFFDVEIDGKAAGRIVMGLYGKTVPETAENFRALCTGEKGIGKSGKPLHFKGSSFHRIIPSFMIQGGDFTQGNGMGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKMEAEGNQSGTPKSKVVIADSGELPL*	205

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g1120	204	PIRSF	Peptidylpro_ismrse	17	203	IPR024936	GO:0003755
	Lja6g1120	204	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	39	199	IPR002130	GO:0000413\|GO:0003755
	Lja6g1120	204	CDD	cyclophilin_ABH_like	35	200	-	-
	Lja6g1120	204	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	86	103	IPR020892	GO:0003755\|GO:0006457
	Lja6g1120	204	SUPERFAMILY	Cyclophilin-like	33	202	IPR029000	-
	Lja6g1120	204	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	12	204	-	-
	Lja6g1120	204	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	55	70	IPR002130	GO:0000413\|GO:0003755
	Lja6g1120	204	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	91	103	IPR002130	GO:0000413\|GO:0003755
	Lja6g1120	204	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	134	149	IPR002130	GO:0000413\|GO:0003755
	Lja6g1120	204	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	149	161	IPR002130	GO:0000413\|GO:0003755
	Lja6g1120	204	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	162	177	IPR002130	GO:0000413\|GO:0003755
	Lja6g1120	204	Gene3D	-	22	203	IPR029000	-
	Lja6g1120	204	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	38	201	IPR002130	GO:0000413\|GO:0003755
	Lja6g1120	204	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1	12	204	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g1120	Lja-Chr6	31176652	31179501	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g1120	49	181	U-box Gene Family	AT5G67530	46.269	1.02e-28	110

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g1120	K01802		-	gmx:100305485	376.326

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja6g1120	6	31176652	31179501	Lja6g1120	6	31176652	31179501	ECH
	Lja6g1120	6	31176652	31179501	Lja6g0414	6	10110591	10114164	ECH