Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1117 ATGACACCAAAAGCGGCACATTTCACTCTCGCTTTATCCCTCGCCGCCATTTTCACCATAACCGCCGTCAACGCCCTCGGCTCCGCCTCCACCACCGCCATCACCTACGGCACCGCCACCATCTGCGGCATAGTAGCCGGTGAACCCGACCAGAACATCCAATGCTACCGAAACGGCACACATATCCCCTTGATCCTCCCCAACGTTTCCTTCCAGGCAATCTCCGGTGGCCGGAGCTTCTTCTGCGGCCTCCGCTCCGGCGGCTACAGCCTCCATTGTTGGGACACCACTGCACCAGCGTTGGTTTTCCGACCCAGGAGGCTGTATCACAATGAACTGGTGCAGTTGAGTGATGTAGCAGTTGGTGATGATCAAGTTTGTGCTAGAGAGTTGAAGTCTGGTGTGGTAAGATGTTGGAGAGGTGGTGGTGGAAATGGGTTGGAATTTCTTTCCCCTGAGAAGGGTTTGAGGTTTCGAAGCATCACTTCTGGGTGTGGTTTTTCTTGTGGGATATTGAAGGAGAACAATAGAGTTTGGTGTTGGGGTAAAGGTGAAAATGGTGATAACATTCATACAAATTTTGGGAATTTGTCAATGTCAACATTAGTTGCTGGGGTGTCTCATGTTTGTGGTTTGACTTTTAATGGGGTTTTGGTTTGTGGGGGAAACAATGGTTCTGGTCAACTGGGTGTTCCTTTTAGTTCACCATCAAGTTTTTCAGGTCTTGCTTTGGGGGAAGATTTCACTTGTGCTATTAAGCGCAGAAATGGACTTATTGAGTGTTTTGGAGGTGGCTGCAGCAAGTTCAGGTTTGATTTGATTCAGGGTGTTTCTTATGAGTCCATTGTTGCTGGTTTGGATTTTGTTTGTGGGGTCACAACTAAGAATTTGTCTGTGATTTGCTGGGGTCCTGGTTGGTCTAAGCTTCAATTGCCTAGTGATCTTCCTCTGGGAATGGTTCTTCCAGGTCCATGTGTTAAGAATGGTTGTGGTTCTTGTGGTATGTATCCAAATTCTGATATGCTCTGTCATGGATCTGGAAGCATTTGCTATTCATGCCAGATTGAAGTTCCACAAGCTGTGCCATTGCTACCATCATCACCAGGTTTACCCAGGCAACAGTTTAATTCCTCAGCGGGAGATAAAAACTTGAGTGAATCCTTGGCCTTTCTGATTGTTGGATCAATTGGGGCTTTTGCAGGGCTATGCACAATTCTTTATCTCCTTTGGATTGGAGCAAGAAAGTTTTTTAAGAAAAAAGTTGATAATTCTGTGCAACCCACAAATAGCGAGTCTGATGCCTATGATGATATGGATCCCATGCCTAATCTTTGTTCAAATGTGACACCAACATTAAGATCTTATTCTAGCAAAATGCTCAGCTCAAGAAGATTCAGGAGTGGTTCATCATCAAAGCAATTAGACAGGACAGAGAGTTTCTCATTATGTGAACTAGCTGAGGCCACCGACAATTTCTCAGTGGGTAACAAGATAGGCGCTGGTAGTTTTGGCAGTGTTTACAAAGGCAAGCTAGCAGACGGTCGCGAAGTGGCGGTTAAAAGAGGAGATACCAGCACTAAGAAGAAGAAATTCCAGGAGAAAGAAATTGCTTTTGATTCTGAATTGCTATTGCTGTCCCGGCTTCACCACAAGCACTTGGTGAGGCTAATCGGGTTCTGTGAGGAGAACGAAGAGCGGCTTCTGGTTTACGAGTACATGAGCAACGGATCGCTCCATGATCATTTACATAACAAGAATAATGTTGAGAAAGGTAGCAGCATTTTGAATTCTTGGAAGATGAGGATCAAAATTGCTTTAGATGCTGCTAGGGGAATTGAGTACCTTCACAACTACGCAGTGCCTCCCATAATTCACAGAGATATTAAGTCATCTAATATATTGTTAGATTCAAATTGGAATGCTAGAGTTTCTGATTTTGGATTGTCATTAATTTGGACTGAGAGTGAGAGTGAGCAAGAAGTGGTGTCCACCAAAGCTGTTGGAACTGTTGGGTACATTGACCCTGAGTACTATGTGCTGAATGTGCTAACCACAAAGAGTGATGTGTATGGTTTGGGAGTGGTGTTGTTGGAGCTTCTGACAGGAGAGAAAGCAGTGTTCAAAGCAAAAGATGGGTCAGGGCCTATTGGTTTGGTGGAATATGCTGAGCCAAAAATAGCAGCAGGAGAGGTGTGGAGTGTGTTGGATTACAGAATTGGAGAGCCGGAAGTGAATGAGGTTGAGTCTCTTGAGCTCATGGCTTACACTGCCATGGATTGTGTGAACTTGGAGGGGAAGGGGAGGCCTGACATGACCAACATTGTTGCTAACTTGGAGAGGGCATTGGCTTTTGTTGAGTACAGTCCTGGTAGCATCTCTAGATCTTCATTCTCTGCACCTCTTTAG 2406 0.453 MTPKAAHFTLALSLAAIFTITAVNALGSASTTAITYGTATICGIVAGEPDQNIQCYRNGTHIPLILPNVSFQAISGGRSFFCGLRSGGYSLHCWDTTAPALVFRPRRLYHNELVQLSDVAVGDDQVCARELKSGVVRCWRGGGGNGLEFLSPEKGLRFRSITSGCGFSCGILKENNRVWCWGKGENGDNIHTNFGNLSMSTLVAGVSHVCGLTFNGVLVCGGNNGSGQLGVPFSSPSSFSGLALGEDFTCAIKRRNGLIECFGGGCSKFRFDLIQGVSYESIVAGLDFVCGVTTKNLSVICWGPGWSKLQLPSDLPLGMVLPGPCVKNGCGSCGMYPNSDMLCHGSGSICYSCQIEVPQAVPLLPSSPGLPRQQFNSSAGDKNLSESLAFLIVGSIGAFAGLCTILYLLWIGARKFFKKKVDNSVQPTNSESDAYDDMDPMPNLCSNVTPTLRSYSSKMLSSRRFRSGSSSKQLDRTESFSLCELAEATDNFSVGNKIGAGSFGSVYKGKLADGREVAVKRGDTSTKKKKFQEKEIAFDSELLLLSRLHHKHLVRLIGFCEENEERLLVYEYMSNGSLHDHLHNKNNVEKGSSILNSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDSNWNARVSDFGLSLIWTESESEQEVVSTKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVLLELLTGEKAVFKAKDGSGPIGLVEYAEPKIAAGEVWSVLDYRIGEPEVNEVESLELMAYTAMDCVNLEGKGRPDMTNIVANLERALAFVEYSPGSISRSSFSAPL* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1117 801 Gene3D Phosphorylase Kinase; domain 1 465 572 - -
Lja6g1117 801 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Lja6g1117 801 SUPERFAMILY RCC1/BLIP-II 111 333 IPR009091 -
Lja6g1117 801 CDD STKc_IRAK 498 780 - -
Lja6g1117 801 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 6 797 IPR044815 GO:0004674
Lja6g1117 801 SUPERFAMILY Protein kinase-like (PK-like) 468 778 IPR011009 -
Lja6g1117 801 SMART serkin_6 492 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1117 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Lja6g1117 801 Pfam Protein kinase domain 493 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1117 801 Gene3D Transferase(Phosphotransferase) domain 1 573 787 - -
Lja6g1117 801 Gene3D - 65 310 IPR009091 -
Lja6g1117 801 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 6 797 - -
Lja6g1117 801 ProSiteProfiles Protein kinase domain profile. 492 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1117 Lja-Chr6 31100161 31102886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1117 8 793 Receptor kinase-like Gene Family AT3G55950 52.593 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lja6g1117 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1117 - - gmx:100776682 1123.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1117 6 31100161 31102886 Lja6g1117 6 31100161 31102886 ECH
Lja6g1117 6 31100161 31102886 Lja6g0400 6 9965816 9969296 ECH