Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1114 ATGAATAAACCCTGTCAAACTTGTTTGATCATGGAGGATGAGCATGTATTGCATCAAAAAAAATCTGCTTTGCTTGAATTTGCAGCCACAGATGATGTGGTAGCATTCAAAGATGCAGTTGAAAAAGATGGTCATGATGTTGATGAGGTGGGGTTGTGGTATGGAAGAAGGGTTGGTTCAAAGAAATTTGGCTATGAAGAGAGAACCCCTCTTATGATTGCTGCTATGTTTGGATGCAAGGGTGTGTTATCTTATATTCTTGAAACATGCCATGTTGATGTTAACAAGGCATGTGGGTCAGATTGTGCTACTGCACTTCACTGTGCTGTTGTTGGGGGTTTTGCAAAATCCCCTGAAATTGTCAAGCTTTTGCTTGATGCATCTGCAGATGTTAATGCTGTTGATTCCAATGTTAAAAGACCCTATGATTTGACTTTCTCTTTGTCCAATTCTAGGAATAGGGTTCTACAAGCCATGCTAGAAGGTGCAAATTGTATTGATGAGGGTTTGGAAGAAGTGAAGAAAGAGCAAACTAGGGTTTCAAAAGATTACCCTGCTGATCCCTCTTTTCCTGACATAAGGAATGGGATATATGGAACTGATGAGTTTAGAATGTTCACATTCAAGGTGAAACCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGTGAAAACGCGAGGCGTCGCGATCCAAGGAAGTATCATTATAGCTGTGTCCCTTGCCCTGAGTTCAAGAAAGGACCCTGCATCAAAGGGGATTCTTGTGAATATGCACATGGTGTGTTTGAGAGTTGGCTTCACCCAGCTCAGTATAGAACCCGGTTATGCAAGGATGAAACTGGATGCACACGAAATGTTTGCTTTTTTGCCCACAAGAAGGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCTGCATTGCCTTGTTCAATGGACTCTTTCTCAACGCCGTCTTTGACTCCATCTGGATCACCTTCTCATGCGGGTGGAACAGTGTGGAAGAGTCAAAATGCAATCCCTACCCTTCAGCTTTCAAGAAACAGATTGAAATCTGCATTGAATGCTAGAGATAGTGATTTAGACATTGAGTTGCTTAAACTTGAAAATCTCAGGCTTATGCAACAGCTAATGCTAGAAGACATGGTTGGTCTTTCATCATCCCCTTCCAAATGGGAAAATTCCATGCCTAATAGTCCAGTTTTTGGTTCCTATATGCAATCTTCAACTGAAATCCAGGTGCATCAGAATGTGAACCAGAAACTACAAGGCTATTCTTCCAACTTTTCCCCTTCGAAAGTGATTGGATCATCACCATTTAGGGTCTTCAATTCTGAGCTTCCTTCTCCTATCACCCCTTTAGATGTGGACCCTTTTACATTCTCTGATTGGGGTTCCCCTGATGGCAAATTAGACTGGACCATCCGCGTTGACGAAAATTATGATGAGCCAGATGTATCTTGGGTTAATTCACTTTTGAAGGATGCTACACCAATGGAATCTGGTCAGTATAGTGTTGAAGAGAAGGTGCAATATTGTCAAAATGGAACAGATGCAGTTTCAGCAGTGTATATGAAGCAGGAGCAGATGGTGGTATGA 1617 0.4218 MNKPCQTCLIMEDEHVLHQKKSALLEFAATDDVVAFKDAVEKDGHDVDEVGLWYGRRVGSKKFGYEERTPLMIAAMFGCKGVLSYILETCHVDVNKACGSDCATALHCAVVGGFAKSPEIVKLLLDASADVNAVDSNVKRPYDLTFSLSNSRNRVLQAMLEGANCIDEGLEEVKKEQTRVSKDYPADPSFPDIRNGIYGTDEFRMFTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFKKGPCIKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRNVCFFAHKKEELRPLYASTGSALPCSMDSFSTPSLTPSGSPSHAGGTVWKSQNAIPTLQLSRNRLKSALNARDSDLDIELLKLENLRLMQQLMLEDMVGLSSSPSKWENSMPNSPVFGSYMQSSTEIQVHQNVNQKLQGYSSNFSPSKVIGSSPFRVFNSELPSPITPLDVDPFTFSDWGSPDGKLDWTIRVDENYDEPDVSWVNSLLKDATPMESGQYSVEEKVQYCQNGTDAVSAVYMKQEQMVV* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1114 538 Gene3D - 106 161 IPR036770 -
Lja6g1114 538 SMART ANK_2a 101 133 IPR002110 GO:0005515
Lja6g1114 538 SMART ANK_2a 66 96 IPR002110 GO:0005515
Lja6g1114 538 SMART c3hfinal6 242 268 IPR000571 GO:0046872
Lja6g1114 538 SMART c3hfinal6 277 300 IPR000571 GO:0046872
Lja6g1114 538 Gene3D - 243 305 - -
Lja6g1114 538 Gene3D - 13 105 IPR036770 -
Lja6g1114 538 PANTHER UNKEMPT FAMILY MEMBER 12 424 IPR045234 -
Lja6g1114 538 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 452 536 - -
Lja6g1114 538 PANTHER UNKEMPT FAMILY MEMBER 452 536 IPR045234 -
Lja6g1114 538 ProSiteProfiles Zinc finger C3H1-type profile. 247 269 IPR000571 GO:0046872
Lja6g1114 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 247 267 IPR000571 GO:0046872
Lja6g1114 538 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 12 424 - -
Lja6g1114 538 ProSiteProfiles Ankyrin repeat region circular profile. 101 135 - -
Lja6g1114 538 ProSiteProfiles Ankyrin repeat profile. 101 136 IPR002110 GO:0005515
Lja6g1114 538 Pfam Ankyrin repeats (3 copies) 59 135 IPR002110 GO:0005515
Lja6g1114 538 SUPERFAMILY Ankyrin repeat 37 146 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1114 Lja-Chr6 30593260 30595264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1114 11 512 C2H2 Transcription Factor Family AT5G12850 36.817 5.69e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja6g1114 Ank_2 3.1e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1114 6 30593260 30595264 Lja6g1114 6 30593260 30595264 ECH