Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1104 ATGCAGACTGAAAAAACGCTTGTTTGTTGCAGCCGCCGCCGTCTTCGGTCGGCGTCCCCGATGTTGGAAGAGGGTTCTGAGGATTTTAGGAGGAGGAAGCGGTTGAGGGTTTCTGCCAAGTTTCAAGTCAATGAAACGGTGGAGGTGAGGAGTGTGGAAGAGGGATTTCTGGGCTCATGGCATCCGTGTACAGTAATCCATGCAGAGAAGGGGAAGCGCCATGTCAGGTATCAAAATGTTTTAGATGATAGTGGGTTGGAACATCTTGTGGAGGAAGTGAGTGTTTCGAAAGTTTTAGATGGTTATACGAGTTCCTCAGATTTCTGTAGACGTGGAGTGATTAGGCCCCTGCCTCCTTGGATTGACTTTGAGATACAAGACCTTAAATTTGGTCTATGTGTTGATGTGTACCATGAGGAAGCTTGGTGGGAAGGTGTGATATTTGATCACTGTGATAGTATGGAGGAGAGGAGTGTATTTTTCCCTGATATGGGTGATGAAATGAGGATTGCAGTTGATGAAATGAGGATTACTCAGGACTGGGATGAAGTTACAGAGAAATGGGAGAAGCGAGGGAAATGGGTGTTTCTTGAATTGATTGAGGAATGTGAGAGGGAATCATATGTTGCAGTTTCAGCTAGGCAAATTTGGTATGATGTGCAGGAAAGAAAGGATTTTGGCGTGGTCGGGGAGTGGACCTTTAATGTGAAAGATTTGTTGAGGGACATGGTGATGAAGGTAGTGAGTGACTACTGGACTCTTACAGTTAATGAAATCTATTCAGTCTTAGATCTTCCAGGGTGTTTATTAAATAAAACACAACAGATGGAGTCAGTTGAAAAAGAAAATTCTGAGCTGCAAGAATTTGTTCTTCCTGTTGAAAAGGACTTACCACTGTTTCAGAAAGAAGTTTCCTGCTGTGGTGCTGGTGAAGTAGTTTCAGGTGCTATCCGTTCTGCTAAAAGAAGAAAAGACGGATCATCTTGGAAACCTCTGAAATTGTCTGAAATTGAATTGTGTCCTGATGCTGTTCAGCAATACATACTTGCTACGAGCAAGGAGGATAAGGAAATGTGGAAGGAAAAGGTAAGAAAACATCTGGCATATCTTGGATGTGAAATTGAATGGGCAGAAAAAAATTCAGGTGTTAAAAGGTATAAGTACAAGTTGCCTGATAAACTGGGACAAAAGGCTTACTATTCACTTATTCAACTTTGTGAAGTTATGCTAAATGACTCCAGCATGAACCCTATCCGTTCTGCTAAAAGAAGAAAAGACGGATCATCTTGGAAACCTCTGAAATTGTCTGAAATTGAATTGTGTCCTGATGCTGTTCAGCAATATGTACTTGCTACGAGTAAGGAGGATAAGGAAATGTGGAAGGAAAAGGTAAGAAAACATCTGGCATATCTTGGATGTGAAATTGAATGGGCAGAAAAAAATTCAGGTGCTAAAATGTATAAGTACAAGTTGCCTGATAAACAGGGACAAAAGGTTTACTATTCACTTATTGAACTTTGTGAAGTTATGCTAAATGACTCCAGCATGAACTCTATGCTTCACCAAAATGATCCAAGTATAATGCATCCTACAGATGACTGTCATCTTTCAAATGTGCTTCCTAATCCTTCAGAAACGATTGAGGACCCAGATAGTTGTCCTCAAATCGAGCCGCCTCCTTCTGTTGTAGTTGTTGATGAACCTCAAGGTTTGCAACCCATAAATGATCAGAGTATAGTGCATCCTACAGATGACTGCCATCTTATAAATGTGCTTCATAATCCTTCAGAAAAGAGTCATGACCTAGATTGTTGTCCTCCTCCTGCTGAGCCACCTTCAGTTGCAGATATTGATAAGCCAGAGTATCCATTAAATGAAGTCTATTCTGAGTTGAAAGAATCTGTTCTTCCTGTCGAAAAGGACTTAGCACTTTTTCAGAAAGAAGTTTCCTGCTGTGGTGCTGGTAAAGTTGTTTCAGGTGCTATCCATTCTACAAAAAGAAGAAACACTAGATTATCTTGGAAACCTCTGAAATTGTCTGAAATTAAATTCTGTCCTGATGCTGTTAAGCATTATGCACTTGCTAAGAGCAAGAAGGAAAGAGGAATTTGGAAGGAAAAAGTAAGAAAACATCTGGCATATCTTGGATGGGAAATTGAATGGGCAGAAAAAAAAGATGGTTCTAAATGTTATAAGTACAATTTGCCTGATAAACTGGGAAATTATTTTTACTTATCACTTCTTGAACTTTGTAAAGGTATGCTAAATGACTCCAGCATGAACTCTTTGTTGCCCCAAAATGATCTGAGTATAATGCATCCTACAGCTGACTGTCATCTTTCAAATGCTCTTCTTAATCCTTCAGAAAAGGTTGAGGACCCAGATAGTTGTCTTCAAATTGAGCCGCCTCCTTCTGTTGCAGTTGTTGATGATCCAGGGTATTGTCTACAAGCTTTGCAGCCCCAAAATGATCATATTATAGTGCATCCTTCAGTTCACTGTTATCGTGTAAATGCACTTCCTAATCCTTCAGAAAAGAGTCATGACCTTGGTAGTTGTCCTCCTCCAGCTGAGCCACCTTCAGTTGCAGTTGTTGATAAGCCAGAGTATTGTCCTGAAGCTGTGGTGGTATATTATGAACATGTATTCATGAAGAGTCGCAGGGCTGATAAGAAGAAATGGATAAACAAAGCAAAGAACCATTTGTTAGCTGAAGGATGGATTCTTGACGATCCACCTCCAGACAATAGAAAAAGGGGGATTATATACACATCTCCTCAAAATCGGAAATTCAGAACACTCCATGAAGCATGCAAATTTTGTATTGAAGTAAGTAATCTTAAATGGAATATTTCTGGTATGCAGCCTTTAGATGTTCCAGAGGAACCTGAGTTACATACTATAGATGATGTTGCTGTGAAAAGATCAACTGCAAATCAGAAACAGAGATGCATAAGAAACTCAAAGACCAGCCTGCTTAAGAGCCAAGGCAATGAATTACCTCTACGGATGCGATCAAATAAAAGGGTGCAAAAGGTGACTTCCGCTTGTCTGTCACACCAGAAGCCTCGAAATGTTCTGTCTTGGTTGATAGACAGTAACATTGTGTTACCGAGGTCTAAGGTTTATTATCAGGGGAAAGAAAGGTGCCATTTTATGGCTGAGGGGCGAATAACTCGTGATGGAATCAAGTGTAGTTGTTGTCAGAAAATATATAGTCCTGCTGGCTTTGAAAACCATGCTAGTGGCTGGAGTTCCTGCAGACCTGCTGCTACTATCTTTTTCGAAGATGGGAGGTCTCTCTTAGATTGTCAGATACAGTTATTGCAAGATCACAAGGAAAGGGAAACTAAGGAAAAACCATTCAGTGATTTGTGTCAAGGCAAGAATGACTACATTTGTTCTGTATGCCACTATGGTGGTGAACTTATTTTATGTGATCAATGCCCGTCTGCTTTTCATAAGACGTGTCTTGGTTTGAAGGTTATCCCGGACGGTGACTGGTTTTGTCCATCATGTCGCTGTGGAATTTGTGGTAACAGAAAAATTGACGGAGATGAGGATGAAACTTTCCTTACTTGCATTCAGTGTGAACATAAATATCACATTAGGTGCCTGAAAAATAGAGATGTGGATAAATCAAGAAGGTATAGGGAAAACTGGTTCTGCGGAGAAGACTGTGAGAAGATATATGCTGGCCTTAATGAACTATTGGGAGTGCCAGTTTCCGTGGGTGCAGACAATCTAACTTGGACACTAATGAAGTTCACTGACTCCGAGAGTTTTGATCTTGGTAGCACTAAAGGAGAGTTTCTGGCAGAAAGCTTCAGCAAACTAAATGTTGCTCTTTCATTGATGCATGAGTGTTTCGAACCTATGAAGGAACCTTTCTCTAGTAGAGATATCATGGAAAATGTTATATTCAGCAGAAGGTCAGAACTCCACCGATTAAATTTCCAGGGTTTCTATATTGTACTTCTTGAGAGAAATGATGAAATGATTAGTGTGGCAACTATTAGGGTCTACGGAGATAAGGTAGCAGAAGTACCGCTAGTTGGAACAAGATTCCAGTATCGTCGACATGGAATGTGTCGCATTTTAATGAATGAGCTTGAAAAGAAGCTCATGCAATTGGGAGTGGAGAGGCTTGTTTTGCCTGCTGTTCCGGGCGTGCTAGGAACGTGGACCGGCTCTTTTGGCTTTGTAGAGATGACAAATTTTGAGAGATCACAATTTCTGGACTATACTTTCCTAGACTTTCAGGATACCATCATGTGCCAGAAGCAGTTGATGAAGATTCCATCTCCAATTTCTGTTTTGACAACAGAGTTCCAACAAAAACATGATGATTTCTCTGGAAGTTGTAGTGTTAACTTCGATAAATCTAGTCCAGCATCTGAAGTATCCCAAGCTGGAGAGACTGAGAAAAGAGGAATGCAGGACGAACAAATGGAGGATGACAATGCAGGCAGTGATGAAAATGATCATCATGGTAGTGGTGTTGTTGACCCTGTCACCATGGTGAAGCAAACATGTTCTGAGGATCAAAAGTTACAGAGTGGAACATCTTCACAGTGCTCTCTTGAAAGACAAGCTGATAGGTATAATAATGGGTCATACAAGTACTACCGACGAAGGAAAATGAGAGAGGTCTCTGTAGGATTTTGA 4668 0.4068 MQTEKTLVCCSRRRLRSASPMLEEGSEDFRRRKRLRVSAKFQVNETVEVRSVEEGFLGSWHPCTVIHAEKGKRHVRYQNVLDDSGLEHLVEEVSVSKVLDGYTSSSDFCRRGVIRPLPPWIDFEIQDLKFGLCVDVYHEEAWWEGVIFDHCDSMEERSVFFPDMGDEMRIAVDEMRITQDWDEVTEKWEKRGKWVFLELIEECERESYVAVSARQIWYDVQERKDFGVVGEWTFNVKDLLRDMVMKVVSDYWTLTVNEIYSVLDLPGCLLNKTQQMESVEKENSELQEFVLPVEKDLPLFQKEVSCCGAGEVVSGAIRSAKRRKDGSSWKPLKLSEIELCPDAVQQYILATSKEDKEMWKEKVRKHLAYLGCEIEWAEKNSGVKRYKYKLPDKLGQKAYYSLIQLCEVMLNDSSMNPIRSAKRRKDGSSWKPLKLSEIELCPDAVQQYVLATSKEDKEMWKEKVRKHLAYLGCEIEWAEKNSGAKMYKYKLPDKQGQKVYYSLIELCEVMLNDSSMNSMLHQNDPSIMHPTDDCHLSNVLPNPSETIEDPDSCPQIEPPPSVVVVDEPQGLQPINDQSIVHPTDDCHLINVLHNPSEKSHDLDCCPPPAEPPSVADIDKPEYPLNEVYSELKESVLPVEKDLALFQKEVSCCGAGKVVSGAIHSTKRRNTRLSWKPLKLSEIKFCPDAVKHYALAKSKKERGIWKEKVRKHLAYLGWEIEWAEKKDGSKCYKYNLPDKLGNYFYLSLLELCKGMLNDSSMNSLLPQNDLSIMHPTADCHLSNALLNPSEKVEDPDSCLQIEPPPSVAVVDDPGYCLQALQPQNDHIIVHPSVHCYRVNALPNPSEKSHDLGSCPPPAEPPSVAVVDKPEYCPEAVVVYYEHVFMKSRRADKKKWINKAKNHLLAEGWILDDPPPDNRKRGIIYTSPQNRKFRTLHEACKFCIEVSNLKWNISGMQPLDVPEEPELHTIDDVAVKRSTANQKQRCIRNSKTSLLKSQGNELPLRMRSNKRVQKVTSACLSHQKPRNVLSWLIDSNIVLPRSKVYYQGKERCHFMAEGRITRDGIKCSCCQKIYSPAGFENHASGWSSCRPAATIFFEDGRSLLDCQIQLLQDHKERETKEKPFSDLCQGKNDYICSVCHYGGELILCDQCPSAFHKTCLGLKVIPDGDWFCPSCRCGICGNRKIDGDEDETFLTCIQCEHKYHIRCLKNRDVDKSRRYRENWFCGEDCEKIYAGLNELLGVPVSVGADNLTWTLMKFTDSESFDLGSTKGEFLAESFSKLNVALSLMHECFEPMKEPFSSRDIMENVIFSRRSELHRLNFQGFYIVLLERNDEMISVATIRVYGDKVAEVPLVGTRFQYRRHGMCRILMNELEKKLMQLGVERLVLPAVPGVLGTWTGSFGFVEMTNFERSQFLDYTFLDFQDTIMCQKQLMKIPSPISVLTTEFQQKHDDFSGSCSVNFDKSSPASEVSQAGETEKRGMQDEQMEDDNAGSDENDHHGSGVVDPVTMVKQTCSEDQKLQSGTSSQCSLERQADRYNNGSYKYYRRRKMREVSVGF* 1556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1104 1555 SMART ring_2 1175 1226 IPR001841 -
Lja6g1104 1555 SMART ring_2 1134 1173 IPR001841 -
Lja6g1104 1555 Pfam Tify domain binding domain 1056 1108 IPR032308 -
Lja6g1104 1555 PANTHER PHD ZINC FINGER PROTEIN 627 819 - -
Lja6g1104 1555 SMART PHD_3 1175 1227 IPR001965 -
Lja6g1104 1555 SMART PHD_3 1133 1174 IPR001965 -
Lja6g1104 1555 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1269 1427 IPR000182 GO:0016407
Lja6g1104 1555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1125 1174 IPR013083 -
Lja6g1104 1555 PANTHER PHD ZINC FINGER PROTEIN 422 568 - -
Lja6g1104 1555 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 422 568 - -
Lja6g1104 1555 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 627 819 - -
Lja6g1104 1555 MobiDBLite consensus disorder prediction 1474 1499 - -
Lja6g1104 1555 Gene3D - 1280 1432 - -
Lja6g1104 1555 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 284 418 - -
Lja6g1104 1555 MobiDBLite consensus disorder prediction 1455 1470 - -
Lja6g1104 1555 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1283 1410 IPR016181 -
Lja6g1104 1555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1175 1230 IPR013083 -
Lja6g1104 1555 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 820 1484 - -
Lja6g1104 1555 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 28 276 - -
Lja6g1104 1555 PANTHER PHD ZINC FINGER PROTEIN 820 1484 - -
Lja6g1104 1555 PANTHER PHD ZINC FINGER PROTEIN 28 276 - -
Lja6g1104 1555 ProSiteProfiles Zinc finger PHD-type profile. 1131 1176 IPR019787 -
Lja6g1104 1555 MobiDBLite consensus disorder prediction 1509 1531 - -
Lja6g1104 1555 MobiDBLite consensus disorder prediction 1455 1531 - -
Lja6g1104 1555 SUPERFAMILY FYVE/PHD zinc finger 1115 1174 IPR011011 -
Lja6g1104 1555 CDD NAT_SF 1324 1385 - -
Lja6g1104 1555 Pfam Agenet domain 45 119 IPR008395 -
Lja6g1104 1555 Coils Coil 269 289 - -
Lja6g1104 1555 PANTHER PHD ZINC FINGER PROTEIN 284 418 - -
Lja6g1104 1555 Pfam PHD-finger 1133 1175 IPR019787 -
Lja6g1104 1555 SMART agenet_At_2 126 183 IPR014002 -
Lja6g1104 1555 SMART agenet_At_2 39 122 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1104 Lja-Chr6 29323060 29331598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1104 50 406 PHD Transcription Factor Family AT5G58610 34.447 4.87e-59 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja6g1104 Agenet 2.2e-15 CL0049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1104 6 29323060 29331598 Lja6g1104 6 29323060 29331598 ECH
Lja6g1104 6 29323060 29331598 Lja6g1104 6 29323060 29331598 PCT