Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1098 ATGTCTTGCTCCGTCGCTGTTTCCAGTTCCCCTGTATTCCCTCTCTCTACTAACCGCTTCTACAGAAAAACCTCCATCATCTCTTCCACCTCCGCGCCGGAACCCCTCATGCTCTCGCTTCCGATTCTCGAGCCACCTTCTCCGACGCCGTGTTGCTCTTCACCCTCTTCGCCGTTGTTGAAGAAGAAGAGACCGGCCAAGCTTGACATACCGATTGGTTCTCTCACCTTCGGCGTACCGGCGGCGGCGGCGGTGTCGCCGGCGACGAGGGATGTCGTCGAGGTTGAGGGAATTGGGTTTTCTGTTTACTGTAAGAGAGGAATGAGGCGGCATATGGAGGATCGTTTCTCTGCTGCTGTTGATCTTCAGGGAGAACCAACTCAGGCTTTCTTTGGCATATTTGATGGGCATGGAGGTGCAAAAGCTTCGGAATTCGCAGCACATAACTTGGAAAAGAATATCTTGGATGAAGTGATTAGGAGAGATGAGAATGATGTTGAGGAGGCTGTGAAGCAAGGTTACCTCAGCACAGATTCTGATTTCTTGAAAGAGGATCTTCGTGGTGGCTCTTGCTGTGTAACAGCATTGATCAGGAATGGTAACCTTGTCGTGTCCAATGCCGGCGATTGTCGCGCTGTCATTAGCAGAGGAGGTGTTGCGGAGGCCCTAACATCTGACCACCGACCTTCAAGGGAAGATGAAAAGGACAGGATTGAGACTCAGGGTGGCTATGTGGATTTATGCCGCGGTGTTTGGAGAATCCAAGGATCACTTGCTGTTTCTAGAGGAATAGGAGATGGACACCTGAAACAATGGGTGATAGCAGAACCTGAGACCAGAGTTCTAAGAATTGAACCTCAACATGACTTTTTAATCTTAGCTTCAGATGGATTATGGGAAAAGGTTAGTAATCAGGAAGCATTAGATGTTGCTCGTTCTTTTTGTGTAGGGAGCAATAGACAACAATCATTGCTGGCTTGTAAGAAGCTCGTAGATTTGTCTGTATCACGAGGATCTATCGATGATATTAGTGTTATGATTATCAGATTGCAGAACTATGTTTAA 1065 0.4779 MSCSVAVSSSPVFPLSTNRFYRKTSIISSTSAPEPLMLSLPILEPPSPTPCCSSPSSPLLKKKRPAKLDIPIGSLTFGVPAAAAVSPATRDVVEVEGIGFSVYCKRGMRRHMEDRFSAAVDLQGEPTQAFFGIFDGHGGAKASEFAAHNLEKNILDEVIRRDENDVEEAVKQGYLSTDSDFLKEDLRGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDEKDRIETQGGYVDLCRGVWRIQGSLAVSRGIGDGHLKQWVIAEPETRVLRIEPQHDFLILASDGLWEKVSNQEALDVARSFCVGSNRQQSLLACKKLVDLSVSRGSIDDISVMIIRLQNYV* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1098 354 Gene3D - 97 353 IPR036457 -
Lja6g1098 354 ProSiteProfiles PPM-type phosphatase domain profile. 99 350 IPR001932 -
Lja6g1098 354 SMART PP2C_4 89 348 IPR001932 -
Lja6g1098 354 Pfam Protein phosphatase 2C 100 343 IPR001932 -
Lja6g1098 354 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 3 353 - -
Lja6g1098 354 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Lja6g1098 354 PANTHER PROTEIN PHOSPHATASE 2C 3 353 IPR015655 GO:0004722|GO:0006470
Lja6g1098 354 SUPERFAMILY PP2C-like 96 352 IPR036457 -
Lja6g1098 354 SMART PP2C_SIG_2 110 350 IPR001932 -
Lja6g1098 354 CDD PP2Cc 98 350 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1098 Lja-Chr6 28260240 28262517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1098 1 354 PP2C-type Phosphatase Gene Family AT2G30020 57.576 4.36e-149 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1098 K17506 - gmx:100818903 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1098 6 28260240 28262517 Lja6g1098 6 28260240 28262517 ECH
Lja6g1098 6 28260240 28262517 Lja6g1098 6 28260240 28262517 PCT