Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1093 ATGAACCTCTCAAATAGCAATTTATTGTATATTGATCTTGTAGCATTCTTTCCAATCAAGGTTGTTAATGTTCATGAGAAGGGAGCCCGGAAGCATCCCAGAGTGACAATATTCAGGAGCTTTGTTGACTTAGAGAAGACAATCTCAGACAGGCGTCAAGATTCTTCTATTGGATTTGGGGCACCTGTACGTGCAAAAATGGGGACTGGTGGTGTCATGGATTCTGATATTGCGTCATCATTATTAGAAACTGTCCTCACAGAACCGAAGAATGCCCTTGGGAATCAATACAAGAAGATGTTCCAAATCAATGGAGTAAAGCTACATTTTACACAAAGCGCTATAATGGATTTAGCAGAAGATGGACATGACAACAGAGTTAGGAGCTACATTAGTTGGGAAGATTTGAAGGTGGATGAGCAAAGCTTAGCCTTGAAGTCCAACAATGATGTTAGAGTTATCATGGTTGATCAGCATGGAAGGGAACATTCAAAAACTGTTCAAGGTGCAGTGGATATGGTTCCAGATCACAACACAAAAAGGGTCAAAATCTACATGTTCCCAGGGGTTTACAGGTCAAAATCTACATTTTTCAGAATTTTTTATTTTCTTTTACTTTCATCACCTTCAGGTTCTAAATTGCGGTCCGCAACCACAATTGCGGAGCCCTCACAACTGCATCACGACGGTAATTGCGGCCCTTTCAACCTGCATTTGCTCGCAATTCTACAATGCAGCCGCCGCAACAACAATTTGAAACCCTGA 765 0.4131 MNLSNSNLLYIDLVAFFPIKVVNVHEKGARKHPRVTIFRSFVDLEKTISDRRQDSSIGFGAPVRAKMGTGGVMDSDIASSLLETVLTEPKNALGNQYKKMFQINGVKLHFTQSAIMDLAEDGHDNRVRSYISWEDLKVDEQSLALKSNNDVRVIMVDQHGREHSKTVQGAVDMVPDHNTKRVKIYMFPGVYRSKSTFFRIFYFLLLSSPSGSKLRSATTIAEPSQLHHDGNCGPFNLHLLAILQCSRRNNNLKP* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1093 254 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 85 119 - -
Lja6g1093 254 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 19 85 - -
Lja6g1093 254 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 19 85 - -
Lja6g1093 254 Gene3D - 78 131 - -
Lja6g1093 254 SUPERFAMILY Pectin lyase-like 153 197 IPR011050 -
Lja6g1093 254 Gene3D - 152 229 IPR012334 -
Lja6g1093 254 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 85 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1093 Lja-Chr6 27724975 27728025 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1093 105 194 Carbohydrate Esterase AT5G55590 41.818 8.17e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1093 K03544 - lja:Lj0g3v0271229.1 256.144