Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1091 ATGGACGATTCACAGTTTCCTAGGCTGAATTTGAGGGAACTAGACTCCAAATGCGAATCAGGAGACCAACCTTTGAGGCAGCAGAATCTGGAACTACTTATAGAGATGATGCAAATAATGAGTCTTCTGGTGGATTTAGCAAAAGGTGGACATGACAACAGAGTTAGGAGCTACATTAGTTGGGAAGATTTGAAGGTGGATGAGCAAAGCTTAGCCTTGAAGTCCAACAATGATGTTAGAGTTATCATGGTTGATCAACATGGAAGGGGACATTCAAAAACTGTTCAAGGTGCAGTGGATATGGTTCCAGATCACACTACACAGAGGGTCAACATCTACATTTTCCCAGGAGTTTACAGAAAAAGTGCTGGTCCCAAAAACCAAGCCTTATGTATCATTATAGGTAAAAGAAATCAAACAGCACGTGTTGTGATTACTTGGAATAGCAAGTCATCAGATAAAGGTCCAAATGGCCAAGCATTAGGCACTTATGGCTCAGCAACTGTAGCAGTAGAATCAGATTATTTTTGTGCAACTGAGATCACTTTTGAGAACACAGTGGTTACAGCACCTGGTACAAAAGGAATGCAAGCAGTGGCACTAAGAGTAGACAGTGATAGAGCCATGTTCTATGGATGTCTCATCCAAGGCAAAGTTGATTTCATCTTTGGTAGTGCAAAATCACTATATGAGAATTGTCGTATTGAGTCAATAGCTGAGAACTACGGAGCCATTTCAGCGCATCACAGGGATTCACCACATGAGGATACAAGCTTTTCTTTTGTAGGGTGTAGCATTGGAGGAAGTGGTGGCAATGTGTACCTTGAGAGAGCATGGGGGGAATACTCAAGAATAATATACTCAAATTTGTTTGGTGAGTATCAGTGTCATGGAAGAGGAGCAGATAGAAGACACAGGGTACCTTGGTCAAAATCATTCAATTATGAAGAAGCTAGGCCCTTTTTGGACAAGAGCTTCATAAATGGAGATCAGTGGCTCAGATTGTAA 1008 0.4147 MDDSQFPRLNLRELDSKCESGDQPLRQQNLELLIEMMQIMSLLVDLAKGGHDNRVRSYISWEDLKVDEQSLALKSNNDVRVIMVDQHGRGHSKTVQGAVDMVPDHTTQRVNIYIFPGVYRKSAGPKNQALCIIIGKRNQTARVVITWNSKSSDKGPNGQALGTYGSATVAVESDYFCATEITFENTVVTAPGTKGMQAVALRVDSDRAMFYGCLIQGKVDFIFGSAKSLYENCRIESIAENYGAISAHHRDSPHEDTSFSFVGCSIGGSGGNVYLERAWGEYSRIIYSNLFGEYQCHGRGADRRHRVPWSKSFNYEEARPFLDKSFINGDQWLRL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1091 335 Gene3D - 212 335 IPR012334 -
Lja6g1091 335 PANTHER PECTINESTERASE QRT1 46 211 - -
Lja6g1091 335 Pfam Pectinesterase 82 217 IPR000070 GO:0030599|GO:0042545
Lja6g1091 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 290 335 - -
Lja6g1091 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 209 289 - -
Lja6g1091 335 PANTHER PECTINESTERASE QRT1 290 335 - -
Lja6g1091 335 PANTHER PECTINESTERASE QRT1 209 289 - -
Lja6g1091 335 SUPERFAMILY Pectin lyase-like 81 333 IPR011050 -
Lja6g1091 335 Gene3D - 47 211 IPR012334 -
Lja6g1091 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 46 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1091 Lja-Chr6 27700530 27707079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1091 50 291 Carbohydrate Esterase AT5G55590 49.648 1.56e-86 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1091 K01051 - gmx:100813382 396.356