Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1087 ATGGCCTCTGAATATCGCTATACAATTGATGATCATCATTGGATCTTCAACAAGCTAAACAGCTCAAACTTCCACTCATATAACCAGGGCCTATTCCTACTACTATGTTTTACTGCCATCCTCATCTTTCTCCCTTCATTGTTCCTTTGTATCCACTTTTGTCGTCGTCGCTTCTCGCATCAACCGGCCACCACCATGGGGATTTCTCCTCTTCCAGATCAACAATGGGTTAAGGTTGAGTACAAAAGCCACCACACTATGCTCCCTTCTTCAACCACCAAGAGCTTTAGCATAGTTGGTGGTGGTGCTGAGAAGAAAGAATGCTGCATATGTTTAGGTCTTTTCCAAGATAATGAAAGGCTGAAGGTGTTAACAGAATGTCAGCATGCCTATCATTCTGATTGTTTGGATATGTGGCTCAGTGCACATCCTAACTGCCCTCTCTGCAGAGCATCCCTCAATGTCAGTAATTGTCCTAAGAAATTCCCAGATGTTATTAATTAG 504 0.4286 MASEYRYTIDDHHWIFNKLNSSNFHSYNQGLFLLLCFTAILIFLPSLFLCIHFCRRRFSHQPATTMGISPLPDQQWVKVEYKSHHTMLPSSTTKSFSIVGGGAEKKECCICLGLFQDNERLKVLTECQHAYHSDCLDMWLSAHPNCPLCRASLNVSNCPKKFPDVIN* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1087 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 156 IPR013083 -
Lja6g1087 167 Pfam Ring finger domain 106 150 IPR001841 -
Lja6g1087 167 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 155 - -
Lja6g1087 167 SUPERFAMILY RING/U-box 107 155 - -
Lja6g1087 167 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 155 IPR044675 -
Lja6g1087 167 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Lja6g1087 167 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1087 Lja-Chr6 27343184 27343687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1087 31 159 C3H Transcription Factor Family AT5G17600 29.630 2.26e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1087 - - lja:Lj0g3v0098519.1 363.229