Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1084 ATGCAATCCCAATTTGACTCACCCAATAACAACAACAATAACACTATGAACACACTGAGTCAAATGTTTCAGAACATTTTCTCAGACAACAGTAACATCATGCTTGCTGCTATCATTTCCCTGCTCCTAGTTATCCTCTTTGTTCTGCTTCTTCATCTCTATGCAAAATGGTTCTTAGCTCAGGCACATGTTCAGGCACAAGCACGCCGCCGCCGTCGCCGGAGAACCACCGTGACTGTCTCCGACGTGCTTGGCCCTGCACGGTTCCACCACTTTCACAGCTTCAACATTGAGGACTCACCCTTGTCTAGCTGCCACACCAAAGGGCTTGACTCTGCTATTGTTGCTGCGATTCCCCTGTTCGTGTATGAAAAACAGAGCAAGGTGGAACAGGAACTAGAATGTGTGATTTGTTTGAGTGCTTTTGAGGATGGTGAAATGGGAAGGTGTTTGCAGAAATGTGGACATGGGTTTCATGTGGAGTGCATTGACATGTGGTTGGGTTCTCATTCCAACTGCCCCATTTGCAGAGCTCCCATTGTGGGTGGGGTTGTTGAGAATGATTCTTCTTCAGGGGATGATGCTTCTTCTGGTTTTGTTGAGATTGTGATTGGTGGTGGTTCAAGTTCTGAGATTAGAGAAAGTGAACCTGGGAATGAGAATTCAGGGGTGAGTCAGAGTGTGAGTGATTCTAGAACAGAAACTTCATCGTCCTTGTTTGGGTGTTCTTTGAAGACAATGCTGAGCAAAGTTTTCCCATCTTCCAATGTAAATGAATTGCAAAATAGAGATGTGAGTCATGTCAGTGTCTAG 813 0.4526 MQSQFDSPNNNNNNTMNTLSQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAHVQAQARRRRRRRTTVTVSDVLGPARFHHFHSFNIEDSPLSSCHTKGLDSAIVAAIPLFVYEKQSKVEQELECVICLSAFEDGEMGRCLQKCGHGFHVECIDMWLGSHSNCPICRAPIVGGVVENDSSSGDDASSGFVEIVIGGGSSSEIRESEPGNENSGVSQSVSDSRTETSSSLFGCSLKTMLSKVFPSSNVNELQNRDVSHVSV* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1084 270 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 258 IPR044675 -
Lja6g1084 270 MobiDBLite consensus disorder prediction 212 236 - -
Lja6g1084 270 Pfam Ring finger domain 134 177 IPR001841 -
Lja6g1084 270 MobiDBLite consensus disorder prediction 209 236 - -
Lja6g1084 270 PANTHER - 12 258 - -
Lja6g1084 270 CDD RING-H2_EL5_like 134 177 - -
Lja6g1084 270 SUPERFAMILY RING/U-box 124 181 - -
Lja6g1084 270 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Lja6g1084 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 182 IPR013083 -
Lja6g1084 270 SMART ring_2 135 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1084 Lja-Chr6 27214334 27215345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1084 8 178 Rapid Response to Elicitors AT3G16720 35.088 1.16e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1084 - - lang:109329145 292.352