Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1076 ATGCGTGGTTTAAAGCTCCCTGAACGTTTCAAGAGCACCCAAGTTCACGCTCTGAGTTCTTCATCATCAGAAACCAATGGTGGGACTAGCAGCAAAGGCATAGTAACCGCCACAAAACCTCACAACATTAGCAGACACAGAATCTGGTCAAAACCCAAATCCAGCACCAACAAATCAACCTCAGCATTTGCAAACCTTGTCCCTCTTCACCTTCCTTCCACCGACACCATTGAACCATTCCTAGAATCTCACCTCAAACCCATCAATCCCATAGAGACCTTAGCAGAACTCTATCATCGCATAGAGTGCTGCTCACAGTCCGAGAAAGCTTCACTCTATGTGGAACAGTTCTCTCTCTTGCACGGCCTCGGTGACCAGAAGATTCTCCGAAGATGTCTCAGGACAGCGCGACAGAACGCTGAGGATGTGTTGTCAAAGGTAGTGTTGTCTGCGTGGTTGCGGTTTGAGAGGAGGGATGATGAGCTTGTTGGTGTTTCTTCAATGGAGTGTGGTGGGTATGTTCTTGAATGCCCAGAGAAGAATTTGGAACATGGGTTTAGTCTCTGTTCGATTGATGATCGCTGTGAGTGTCAGCAAGAGCCAAAAGAGGAAAGTGTAAATGAGAATCTGTGGTTGCTTGGTGAGGAAAGTGATGTTTTGTTTTCTGTTGGGAATGAAGAAATCAATTGTGTTAGGTGCAGAATTGCTGCACTTTCAGACCCATTAAATGCCATGCTTTATGGTGGTTTTGCAGAGTCCCAAATGGGGAAGATTGATTTCTCAGGAAATGGGATAACCCCAGAGGGAATGAAGGCAGTGGAATTTTACAGCAGGACCAAAAGATTGGACCTTCTCTCTCCCATGACTGTTTTGGAGCTTTTGTCCTTTGCCAATAGGTTTTGTTGTGAGGAAATGAAGTCTTCCTGTGATGCCCATTTGGCTTCAATTGTTGTAAATATTGAAGATGCATTGGTACTTATTGAGTATGGATTGGAAGAGAGAGCCACTCTTCTTGTAGGCTCTTGCTTACAGATGATGCTAAGAGAGCTTCCTAATTCTCTGTATAATCCAAAAGTGGTAAAATTGTTCTGTAGTTCTGAGGCAAAGGAAAGGTTGGCTATGGTGGGGTGTGCTTCTTTCTTATTATACTATTTCCTGAGCCAGGTTGCTATGGAGGAAAGCATGGTTTCTAAAACTACAATGATGTTATTGGAGAGATTAGGGGAGTGTGCTAGAGAAAAGTGGCAGAAAGCCCTTGCTTTTCATCAATTGGGGTGTGTGTTACTTGAAAGGAAAGAATATAAAGATGCTCAGCATTGTTTTGAGGAAGCAGTTGAGGCAGGTCATGTTTATTCCATGGCTGGTGTGGCCAGAACCAAGCACAAGCAGGGTCAACCTTATTCAGCTTATAAGTTAATTAGTTCTCTCATATTTGAGTATAAACCAGCTGGGTGGATGTATCAGGAGAGAGCATTGTATAATATGGGTAGGGAAAAGAGTTTTGATTTGGATGTTGCCACTGAATTGGATCCCTCCCTTTCCTTTCCATATAAATATAGAGCCCTGGCAAAGGTGGAGGAGAAGAAGGTAAAAGAAGGAGTCATGGAGCTAGATAAGTTTATTGGGTTTAAGCTCTCCCCTGATTGCCTTGAATTGAGGGCTTGGTTGTATATTGCACTTGGGGATTATGACAGTGCCGTGAGAGACATTCGCGCGTTGTTAACCATAGAGCCAAATTACATAACTTTACATGGGAGGATCAAAGGGGAATGCTTGGTCCAACTTCTAAGCCGTGGAATTCAGAAGAGTCAGGCTGAATGCTGGATGCAATTATACCAACAATGGTCTTCTGTAGATGATGTTGGTTCTTTGGCTATTATACATGAGATGCTAGAGAAAGAGCCTGGAAAGAGCGTGCTCGAGTTTCGTCAATCTCTACTCCTATTGAGGTTAAACTGTCAAAAGGCTGCGATGCGCAGTTTGAGGATGGCCAGAAACCATTCTAGCTCAATGCAAGAAAGTCTAATTTATGAAGGATGGATTCTATACGACACCGGTAATCGTGAAGAAGCTCTTACAAGGGCTGACAGATCCATTACAATTCAGAGAACGTTTGAAGCTTTTTTCCTAAAAGCATATGTGTTAGCAGATTCTAGTCTAGACCCTGAATCTTCTTCTTATGTTATCCAGCTTCTGAAAGAAGCACTTAAATGTCCTTCAGATGGTCTTCGCAAAGGACAAGCACTGAATAACTTGGGGAGTATATATGTGGATTGCGGTAAACTAGAACTTGCAAAGGAATGCTACAACAACGCGCTTGCAATTAGGCACACCAGAGCTCATCAGGGTCTGGCAAGAGTTTATCATCAGAAAAGTCAAAGAAAAGCTGCATATGATGAGATGACCAAGCTAATTGAGAAGGCGGAGAGTAATGCTTCAGCATATGAAAAACGATCAGAATACTGTGACCGTGAGATCGCAAAGGCCGATCTTGATGTTGCAACACAACTTGATCCTTTAAGGACATACCCTTATAGATACAGGGCAGCAGTGATGATGGATGAGCAAAAGGAAACTGAAGCTGTAGAGGAACTCACAAAGGCCATAAAATTCAAGCCTGACGTGCAAATGCTTCATCTGCGAGCAGCATTTTACGAGTCAATGGGAGACCTATCCTCTGCTATCCAAGACTGTCAGGCAGCTCTTTGCTTAGACCCCAACCATGCTGGCACACTTGACCTGTATCAAAGGACACGCAAATTGAACATCTAA 2772 0.434 MRGLKLPERFKSTQVHALSSSSSETNGGTSSKGIVTATKPHNISRHRIWSKPKSSTNKSTSAFANLVPLHLPSTDTIEPFLESHLKPINPIETLAELYHRIECCSQSEKASLYVEQFSLLHGLGDQKILRRCLRTARQNAEDVLSKVVLSAWLRFERRDDELVGVSSMECGGYVLECPEKNLEHGFSLCSIDDRCECQQEPKEESVNENLWLLGEESDVLFSVGNEEINCVRCRIAALSDPLNAMLYGGFAESQMGKIDFSGNGITPEGMKAVEFYSRTKRLDLLSPMTVLELLSFANRFCCEEMKSSCDAHLASIVVNIEDALVLIEYGLEERATLLVGSCLQMMLRELPNSLYNPKVVKLFCSSEAKERLAMVGCASFLLYYFLSQVAMEESMVSKTTMMLLERLGECAREKWQKALAFHQLGCVLLERKEYKDAQHCFEEAVEAGHVYSMAGVARTKHKQGQPYSAYKLISSLIFEYKPAGWMYQERALYNMGREKSFDLDVATELDPSLSFPYKYRALAKVEEKKVKEGVMELDKFIGFKLSPDCLELRAWLYIALGDYDSAVRDIRALLTIEPNYITLHGRIKGECLVQLLSRGIQKSQAECWMQLYQQWSSVDDVGSLAIIHEMLEKEPGKSVLEFRQSLLLLRLNCQKAAMRSLRMARNHSSSMQESLIYEGWILYDTGNREEALTRADRSITIQRTFEAFFLKAYVLADSSLDPESSSYVIQLLKEALKCPSDGLRKGQALNNLGSIYVDCGKLELAKECYNNALAIRHTRAHQGLARVYHQKSQRKAAYDEMTKLIEKAESNASAYEKRSEYCDREIAKADLDVATQLDPLRTYPYRYRAAVMMDEQKETEAVEELTKAIKFKPDVQMLHLRAAFYESMGDLSSAIQDCQAALCLDPNHAGTLDLYQRTRKLNI* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1076 923 Gene3D Tetratricopeptide repeat domain 820 922 IPR011990 GO:0005515
Lja6g1076 923 MobiDBLite consensus disorder prediction 13 37 - -
Lja6g1076 923 Gene3D Tetratricopeptide repeat domain 403 584 IPR011990 GO:0005515
Lja6g1076 923 SUPERFAMILY TPR-like 417 541 IPR011990 GO:0005515
Lja6g1076 923 ProSiteProfiles TPR repeat profile. 547 580 IPR019734 GO:0005515
Lja6g1076 923 Gene3D Potassium Channel Kv1.1; Chain A 207 354 IPR011333 -
Lja6g1076 923 SMART BTB_4 217 317 IPR000210 GO:0005515
Lja6g1076 923 MobiDBLite consensus disorder prediction 11 37 - -
Lja6g1076 923 PANTHER ETO1-LIKE PROTEIN 2 1 921 - -
Lja6g1076 923 ProSiteProfiles TPR repeat profile. 746 779 IPR019734 GO:0005515
Lja6g1076 923 SUPERFAMILY POZ domain 208 313 IPR011333 -
Lja6g1076 923 Gene3D Tetratricopeptide repeat domain 640 810 IPR011990 GO:0005515
Lja6g1076 923 SUPERFAMILY TPR-like 729 915 IPR011990 GO:0005515
Lja6g1076 923 Pfam BTB/POZ domain 211 313 IPR000210 GO:0005515
Lja6g1076 923 Coils Coil 798 818 - -
Lja6g1076 923 Pfam Tetratricopeptide repeat 552 579 IPR019734 GO:0005515
Lja6g1076 923 Pfam Tetratricopeptide repeat 876 908 IPR019734 GO:0005515
Lja6g1076 923 Pfam Tetratricopeptide repeat 747 775 IPR019734 GO:0005515
Lja6g1076 923 SMART tpr_5 547 580 IPR019734 GO:0005515
Lja6g1076 923 SMART tpr_5 746 779 IPR019734 GO:0005515
Lja6g1076 923 SMART tpr_5 672 705 IPR019734 GO:0005515
Lja6g1076 923 SMART tpr_5 875 908 IPR019734 GO:0005515
Lja6g1076 923 SMART tpr_5 418 451 IPR019734 GO:0005515
Lja6g1076 923 ProSiteProfiles TPR repeat profile. 875 908 IPR019734 GO:0005515
Lja6g1076 923 PANTHER ETO1-RELATED 1 921 IPR044631 GO:0010105
Lja6g1076 923 SUPERFAMILY TPR-like 418 818 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1076 Lja-Chr6 26125154 26129567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1076 747 907 Glycosyltransferase AT3G04240 28.070 4.45e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja6g1076 BTB 4.4e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1076 - - gmx:100790527 1541.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1076 6 26125154 26129567 Lja6g1076 6 26125154 26129567 ECH
Lja6g1076 6 26125154 26129567 Lja6g1076 6 26125154 26129567 PCT