Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1075 ATGGAAGAAGAAGCATGGAGATTCTTCACTTGGTTAAAGTTCTGTCGCGTGGTGGCATTTATGCTGATGGTATCTCCGTTCCCGTTGAGCATGCATCATTGTCGGTGTTCCACTCTGAACAACGAAGGGTTGGCGATGTTAAAGATGAGGGAGAGAGTGACGAGGGATCCTTTGGAGGCTTTATGGAGTTGGAATGATGAAGAAGGAGTCATTGATCCGTGCTCGTGGTTCGGAGTGGAGTGCTCCGAAGGCAATGTTGTCTCCTTGAATTTGAAAGATCTATGCCTCCACGGAACACTAGCACCAGAAATTGGGAAGCTGGTTCACATAAAATCAATTATTTTGCGTAACAATTCTTTCTTAGGAGACATCCCTAAGGAGATACTACATTTGGAGGAACTGGAAGTTCTTGACTTGGGATTTAACAACTTCAGTGGACCATTTCCATCTGAAGACCTTGCCAACAATCCATCTCTGACTACCCTTTTATTGGACAACAATGACTATCTATCAAACCTGACTCCAGATGATGTGTATAAGCTCAAGATCATTTCTGAATTGCATGTACATGAAGAACAGCAAACTGGTGATTTGACAAGAAACACAAGTGGTGGCATTTCTAATTTCTGGCACATTGGACGACAAGGAGTTAATGCATATAGAAGGTCACTTCTCCAAGCATCAAATACTGCCTCACCCAACACTAAAAGGGATGAAGACAATGAGACTCTTTCACCAACAACATCACATTTTCCCTCTTCATTATCACCAGTTTCTGAGCCTTTCACACCATCACCATCAATAGTTTCCACATCAGAAAGTCCCTCAAATCCACCGTCATCTTTTTTGAGATCTCCAGAAGTTTCCCCTTCACCATCTCCCTCCCTCTCTCCCTCACCCTCAAGTTTCTTTTTTACTCTTTCAACCTCACCTTCACCTCTGGTAGCACCAACTCCAGAGAAATCACTTTTAACAAATACACCTTCAATTGAGTCCACACCACCAAATTCTAATTGGGATTCAACAAACTCCTCTGCTTCATCTCCAAACCAAGAGAATTCAAACAGTTCAAACATAAAGCAACATTCTGTGATTATTTGGTTTACAATTGGAGGCTTCTCCTTCCTGATTTTGGTATCAGCAACTGTTTTAATTTGCTTCAGAAGTAGTAAGGTTGTAACTGTAAAACCTTGGGCCACAGGGTTGAGTGGTCAGCTGAGGAAAGCATTTATAACAGGTGTTCCAAGTCTGAAAAGAGCAGAACTTGAGGTAGCTTGTGAAGATTTCAGCAACATCATTGGTTCTCTGCCCTATGGGGCTGTTTATAAAGGGACTCTTTCAAGTGGAGTTGAGATAGCTGTAGCGTCCCCTGCGGTAACGTCATCCAAAAATTGGTCAAAAGCTATGGAAGCTCAATTCCGAAAGAAGATTGAGATGTTATCAAGGGTGAACCACAAGAACTTTGTGAATCTTATAGGGTATTGTGCAGAGAACAAGCCATTCACAAGGATGATGGTTTTTGAGTACGCTTCAAATGGATCGCTATTTGAGCATCTACACATTAGAGAAGCAGAACAACTAGACTGGGCAATGAGAATGAGGATAGCTATGGGAATAGCCTACTGTTTAGAGCACTTGCATCAGCTGACACCACCCATTGCCCACAAGAACCTGCTAACTTCCTCTATATATCTGACTGAAGATTATGCTGCTAAATTATCGGATCTTAGTCTCTGGAGCGACATAGTAGCTACGGAGAAGGTTTCTGAAGCCACACAGCTCTTAGAAACAACTTCAGCGCACATAAAGGGAAATGTGTATAGCTTTGGTGTAATATTGTTTGAATTGATCACAGGGAGGATTCCCTTTGGAGTGGACAATGACTTTCTTGCAGATTGGGCAGCAGAATATATAAGGGGGCAACCCTTGAGAGAAATGGTGGATATAAGCTTGAACTTTCTGAAACCAGATGAAATTGAGAAATGGTCCGAAGTTATTAATAACTGTGTACATCCAGATCCAGAAAAAAGACCAACTATGAGAGAGGTTACAGCTAAGTTGAAGGAGATCACTTCCATGGGGCCTGATGGAGCAACTCCAAAATCATCCCCTCTTTGGTGGGCAGAGTTGGAAATCATTTCCGCTGATTTAAGTTCAGACATTAATCCATAG 2172 0.4217 MEEEAWRFFTWLKFCRVVAFMLMVSPFPLSMHHCRCSTLNNEGLAMLKMRERVTRDPLEALWSWNDEEGVIDPCSWFGVECSEGNVVSLNLKDLCLHGTLAPEIGKLVHIKSIILRNNSFLGDIPKEILHLEELEVLDLGFNNFSGPFPSEDLANNPSLTTLLLDNNDYLSNLTPDDVYKLKIISELHVHEEQQTGDLTRNTSGGISNFWHIGRQGVNAYRRSLLQASNTASPNTKRDEDNETLSPTTSHFPSSLSPVSEPFTPSPSIVSTSESPSNPPSSFLRSPEVSPSPSPSLSPSPSSFFFTLSTSPSPLVAPTPEKSLLTNTPSIESTPPNSNWDSTNSSASSPNQENSNSSNIKQHSVIIWFTIGGFSFLILVSATVLICFRSSKVVTVKPWATGLSGQLRKAFITGVPSLKRAELEVACEDFSNIIGSLPYGAVYKGTLSSGVEIAVASPAVTSSKNWSKAMEAQFRKKIEMLSRVNHKNFVNLIGYCAENKPFTRMMVFEYASNGSLFEHLHIREAEQLDWAMRMRIAMGIAYCLEHLHQLTPPIAHKNLLTSSIYLTEDYAAKLSDLSLWSDIVATEKVSEATQLLETTSAHIKGNVYSFGVILFELITGRIPFGVDNDFLADWAAEYIRGQPLREMVDISLNFLKPDEIEKWSEVINNCVHPDPEKRPTMREVTAKLKEITSMGPDGATPKSSPLWWAELEIISADLSSDINP* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1075 723 Gene3D Ribonuclease Inhibitor 41 207 IPR032675 -
Lja6g1075 723 ProSiteProfiles Protein kinase domain profile. 427 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1075 723 MobiDBLite consensus disorder prediction 245 290 - -
Lja6g1075 723 Pfam Protein tyrosine and serine/threonine kinase 430 687 IPR001245 GO:0004672|GO:0006468
Lja6g1075 723 PANTHER PROTEIN MALE DISCOVERER 2 5 715 - -
Lja6g1075 723 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 5 715 - -
Lja6g1075 723 MobiDBLite consensus disorder prediction 227 295 - -
Lja6g1075 723 Gene3D Transferase(Phosphotransferase) domain 1 510 696 - -
Lja6g1075 723 Gene3D Phosphorylase Kinase; domain 1 405 509 - -
Lja6g1075 723 SUPERFAMILY Protein kinase-like (PK-like) 412 687 IPR011009 -
Lja6g1075 723 MobiDBLite consensus disorder prediction 314 356 - -
Lja6g1075 723 Pfam Leucine rich repeat N-terminal domain 40 82 IPR013210 -
Lja6g1075 723 SUPERFAMILY L domain-like 51 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1075 Lja-Chr6 26115722 26124902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1075 37 694 Receptor kinase-like Gene Family AT2G01210 25.169 2.25e-41 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lja6g1075 PK_Tyr_Ser-Thr 1.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1075 - - gmx:100801161 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1075 6 26115722 26124902 Lja6g1075 6 26115722 26124902 ECH
Lja6g1075 6 26115722 26124902 Lja6g0366 6 9385113 9389508 ECH
Lja6g1075 6 26115722 26124902 Lja6g1075 6 26115722 26124902 PCT