Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1054 ATGGCGGCAGCCTTAGAGTGCTGGTCGAGGCGCGGTGGCAACGACGAGGACATGGTGGAGCAGGTTCTCATGGAGGTCCCAACTTCCCAACCCAAGGACCCTTCCCTCCTCCACAAGAAGCTCCACAAGCTCACACGCAATGTTTCCGAGGCCATTGCCTCTCTCAGAAACTCCCTCAACATCAACCTCAACCTCGATTCTTCCAAACCCGACAACACTTGTGGTGGCGGCAGCAGCAACCTCGTTTGGGGCACGGTTGTCCGAAACCTTACCCAGCTCTACCCTGGTAGCCAGCTCCCGGAGAAGCTCATGTCCAACATTCGCAAGCACTATGATTCCTTGCCCCTAAGTTATTCGCAGGCGGGGTTTGATGTGAAAGATGTGTTTCTTCACATCAAGTTGATGGAACAAGCTTTGGAAGATGAGCAGGCTGCGATTTTGATTCAGGAGGAATGTGATGATCAGATGCAGCTTCAAGGATCTTTGTTCAAGTTGACATTTGCTTGCAACTCTCCGATTTCGTGGCCTGCAATGTCGGGTGCGTTGGATGGTTTCTCCATTTGCTGCAAGAAGATTCAGATCTTTGAGAAGAAAGGCTTCACACTTGGGATTGTTCTTCTGCTTGTTCTGTCTGGCACTGGGCTAGAGAAGCCAGTGAGGAGCCGGGTTGAAAGTGCTCTCAAGTGTGCCATGAGGAAGCCCAAGACCAGTACTGTAAAGCTTCCCTTTGGGCTTTGTGGATGTCAAGAGGAGAACTCCAAGGGAAGAGAGCTTGGGGAGATTGAAGAAGATGGTGGCAATGCATATTGTGGAAATGGGTTTGAGAATTTGAGCCAAAAATTTCACCTTGAGGTGCCCTTGCCCAGTTCTCCTTTTCTTGTATCAGTAGATGAATGGCAGACTATTCAGACAGGTGGGGATGACGTGGAAAAATGGATGTTGAATTCAGATAGTCTTGAGTTTGTAGATCAGATCGGACCCAATTCATATAAGGGAACCTACATGGGAAAAAGGGTGAGGATTGAGAAGCTTAGAGGGTGTGAAAAAGGGAATGCTTATGAGTTTGAGCTCAGGAAAGATCTGCTAGAACTGATGACTTGTGGGCATAAAAATATTTTGCAGTTTTGTGGTGTTTGTGTGGATGACAATCATGGACTATGCGTAGTGGCGAAATGGATGGAAGGTGGATCTGTTCATGATTTAATAATGTCAAAGAACAAGAAGCTTCAGAGCAAGGACATTGTAAGAATTGCAGTTGATGTAGCTGAAGGGCTTAAGTTTATGAATGATCATGGTGTTGCATACAGAGACATTAATACGCAGAGGATTCTGTTGGATAAGTATGGGAATGCTTGCTTGGGAGATATGGGCATAGTCACTGCCAGCAAGGGTGTTGGAGAGGCAATGGAGTATGAAACTGATGGTTATCGGTGGCTAGCTCCCGAGATAATTGCTGGTGACCCGGAGAGTGTCACAGAGACATGGATGAGTAATGTTTATAGCTTTGGCATGGTAATTTGGGAGATGGTAACTGGCGAGGCAGCCTATTCTGCATATTCACCTGTGCAAGCAGCAGTTGGCATTGCTGCTTGTGGCCTTAGACCTGAGATCCCCAAGGACTGCCCACAAACTCTAAAATCTCTCATGACAAAGTGCTGGAACAACACCCCTTCAAAACGCCCCCAATTCTCCGACATTTTAGCAATATTGCTGCGACCGCACAACAACAATAGGTAA 1737 0.4727 MAAALECWSRRGGNDEDMVEQVLMEVPTSQPKDPSLLHKKLHKLTRNVSEAIASLRNSLNINLNLDSSKPDNTCGGGSSNLVWGTVVRNLTQLYPGSQLPEKLMSNIRKHYDSLPLSYSQAGFDVKDVFLHIKLMEQALEDEQAAILIQEECDDQMQLQGSLFKLTFACNSPISWPAMSGALDGFSICCKKIQIFEKKGFTLGIVLLLVLSGTGLEKPVRSRVESALKCAMRKPKTSTVKLPFGLCGCQEENSKGRELGEIEEDGGNAYCGNGFENLSQKFHLEVPLPSSPFLVSVDEWQTIQTGGDDVEKWMLNSDSLEFVDQIGPNSYKGTYMGKRVRIEKLRGCEKGNAYEFELRKDLLELMTCGHKNILQFCGVCVDDNHGLCVVAKWMEGGSVHDLIMSKNKKLQSKDIVRIAVDVAEGLKFMNDHGVAYRDINTQRILLDKYGNACLGDMGIVTASKGVGEAMEYETDGYRWLAPEIIAGDPESVTETWMSNVYSFGMVIWEMVTGEAAYSAYSPVQAAVGIAACGLRPEIPKDCPQTLKSLMTKCWNNTPSKRPQFSDILAILLRPHNNNR* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1054 578 SUPERFAMILY Protein kinase-like (PK-like) 309 571 IPR011009 -
Lja6g1054 578 ProSiteProfiles Protein kinase domain profile. 319 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1054 578 Gene3D Transferase(Phosphotransferase) domain 1 312 574 - -
Lja6g1054 578 Pfam Protein tyrosine and serine/threonine kinase 356 569 IPR001245 GO:0004672|GO:0006468
Lja6g1054 578 PANTHER SERINE-THREONINE PROTEIN KINASE 1 574 - -
Lja6g1054 578 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 574 - -
Lja6g1054 578 PRINTS Tyrosine kinase catalytic domain signature 497 519 IPR001245 GO:0004672|GO:0006468
Lja6g1054 578 PRINTS Tyrosine kinase catalytic domain signature 390 403 IPR001245 GO:0004672|GO:0006468
Lja6g1054 578 PRINTS Tyrosine kinase catalytic domain signature 541 563 IPR001245 GO:0004672|GO:0006468
Lja6g1054 578 PRINTS Tyrosine kinase catalytic domain signature 427 445 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1054 Lja-Chr6 25226074 25230058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1054 302 570 MAP Kinase Kinase Kinase AT2G17700 30.769 8.19e-50 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Lja6g1054 PK_Tyr_Ser-Thr 3.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1054 - - gmx:100811417 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1054 6 25226074 25230058 Lja6g1054 6 25226074 25230058 ECH
Lja6g1054 6 25226074 25230058 Lja6g1054 6 25226074 25230058 PCT