Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1051 ATGGAAGGTGGAATTCCACCACTTGTTCATTTGTTAGAATTTGCTGATACAAAGGTGAAAAGAGCAGCTGCTGGTGCACTGCGAACCGTAGTTTTTAAAAACGATGAAAATAAAAATCAAATTGTTGAATGCAATGCTCTTCCAACTCTAATTCTAATGCTGCGTTCTGAAGATGCTGCTATTCGTTATGAATCGGTTGGTATCATTGGAAACCTAGTCCACTCTTCTCCTAATATGAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTTATTGGATTACTCAGATCATGCTGCTCGGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATAGACAGAAGCGGTATCCGACCTTTGATAGAAATGCTTCAATCTCCTGATATTCAGCTCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCCCAGGACACACACAGCCAAGCGGATATTGCACAGAATGGCGGGTTAGTGCCATTGCTAAATCTTCTTAACTCAAATAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGCCCGATTTCATTAGGGTAGGTGAAGTTCAGAGACTGCAGGAAGGAGAGTTTACTGTTCAAGTAACTAAAGATTGTGTTGCTAGGACACTGAAAAGATTAGAGGAGAAGATTCACGATTGTGTTTGA 735 0.415 MEGGIPPLVHLLEFADTKVKRAAAGALRTVVFKNDENKNQIVECNALPTLILMLRSEDAAIRYESVGIIGNLVHSSPNMKKEVLLAGALQPVIGLLRSCCSESQREAALLLGQFAATDSDCKVHIDRSGIRPLIEMLQSPDIQLREMSAFALGRLAQDTHSQADIAQNGGLVPLLNLLNSNNGSLQHNAAFALYGLADNEDNVPDFIRVGEVQRLQEGEFTVQVTKDCVARTLKRLEEKIHDCV* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1051 244 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 3 38 IPR000225 GO:0005515
Lja6g1051 244 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 169 202 IPR000225 GO:0005515
Lja6g1051 244 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2-LIKE 1 242 - -
Lja6g1051 244 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 128 170 IPR000225 GO:0005515
Lja6g1051 244 Pfam HEAT repeat 131 157 IPR000357 GO:0005515
Lja6g1051 244 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 242 IPR044282 -
Lja6g1051 244 Gene3D - 1 237 IPR011989 -
Lja6g1051 244 Pfam Armadillo/beta-catenin-like repeat 34 73 IPR000225 GO:0005515
Lja6g1051 244 Pfam Armadillo/beta-catenin-like repeat 2 28 IPR000225 GO:0005515
Lja6g1051 244 SMART arm_5 76 116 IPR000225 GO:0005515
Lja6g1051 244 SMART arm_5 158 198 IPR000225 GO:0005515
Lja6g1051 244 SMART arm_5 117 157 IPR000225 GO:0005515
Lja6g1051 244 SMART arm_5 2 32 IPR000225 GO:0005515
Lja6g1051 244 SMART arm_5 34 74 IPR000225 GO:0005515
Lja6g1051 244 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 45 87 IPR000225 GO:0005515
Lja6g1051 244 SUPERFAMILY ARM repeat 4 215 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1051 Lja-Chr6 24813560 24825212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1051 5 210 U-box Gene Family AT3G46510 27.273 1.26e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1051 - - pvu:PHAVU_002G047400g 399.823