Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1042 ATGGGGGGTTCCTCACCTTGTGCTTCCTGCAAATTGTTGAGACGCCGCTGCACCCAGGAATGCATCTTTGCACCTTACTTTCCTTCTGATGACCCTCGCAAGTTTGCCATTGTGCATAAGGTCTTTGGTGCTAGCAATATCAGCAAAATGCTGCAGGAGCTTCCAGTTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTATTCGAGGCAAATGCAAGAGTGAGAGACCCTGTTTATGGTTGTGTTGGAGCCATATCATACCTTCAAGACCAGGTTTCACAGTTGCAAATGCAGCTCGCGGTGGCTCAGACAGAGATCCTCTGCATCCAGATGCAGCAAGACCCTGCTGCGTCCTTACCCGTTCATCAGGTTGATCATCAAGATGTGAAATCGTTGCTCCTATCTGACCACAACAACTACCAAATCCTTCCCCAGCAGTATCTAAGCTTTCCTTCATCTTCTTCCTCATCTTCCAGTGTATTCCAAGATTCTTATGACTCTCTTAAAAGAGAGTCTTTTTGGACTTAA 528 0.464 MGGSSPCASCKLLRRRCTQECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVFEANARVRDPVYGCVGAISYLQDQVSQLQMQLAVAQTEILCIQMQQDPAASLPVHQVDHQDVKSLLLSDHNNYQILPQQYLSFPSSSSSSSSVFQDSYDSLKRESFWT* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1042 175 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 2 172 - -
Lja6g1042 175 Coils Coil 85 105 - -
Lja6g1042 175 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Lja6g1042 175 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Lja6g1042 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1042 Lja-Chr6 24554613 24555903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1042 3 175 AS2 family AT2G30130 65.789 1.02e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja6g1042 LOB 4.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1042 - - gmx:100780073 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1042 6 24554613 24555903 Lja6g1042 6 24554613 24555903 ECH
Lja6g1042 6 24554613 24555903 Lja6g0359 6 9115065 9117259 ECH
Lja6g1042 6 24554613 24555903 Lja6g1042 6 24554613 24555903 PCT