Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1040 ATGTCGAAGGTGGTTTGTGTCACTGGAGCCAGCGGCGCCATCGGATCATGGGTGGTTAAGCTCCTCCTCGACCGTGGCTACACCGTCCACGCCACCGTCCAAGATCTCAAGGATGAAAAAGAGACCAAACATCTGGAGGCAATGGAAGGAGCTAAGGGCCGTCTCCGCCTCTTCGAGATGGACCTTCTTGACACCAACTCCATCGCCACCACCGTGAAGGGTTGTAATGGCGTCATACACCTTGCCTGTCCTAATGTCATTGGCCAAGTCACAGATCCAGAGAAACAAATATTGGAACCGGCAATAAAAGGGACAGTAAATGTTCTGAAGGCGGAGAAGGAAGCAGGGGCGGAGCGGGTGGTGGCGACTTCGTCTATCTCCGCCATCACGCCGAGTCCGAATTGGCCAGCTGATAAGATCAAGGGAGAGGACTGTTGGACGGATCTTGAATACTGCAAGGAAAAGGGGTTATACTATCCCATTGCGAAGACACTAGCTGAAAAAGCAGGCTGGGAATTTGCAAAGGAAACAGGCTTCGATGTGGTGATGATAAATCCTGGCACTGCCTTGGGCTCTCTTATTTCCCCAAGAATCAATTCCAGCATGGTTGTGCTTGCTGGCGTTCTCAAAGGTGATAAAGAGACATATGAGGACTTCTTTATGGGAATGGCTCACTTTAAAGATATTGCCTTGGCCCATATTTTGGCATTTGAGAACAAGAAGGCAGCTGGAAGGCACTTATGTGTGGAAGCTATTCGTCACTATAGTGATTTTGTGGCAATAGTTGCTGACTTATACCCTGAATATAATGTGGTTAGGGTGACAAAGGATACCCAACCAGAGTTGTTGAGAGCAAATAATGCATCCAAGAAGCTGATTGATTTAGGTCTAAACTTCACACCTGCTGAACAAATTATCAAGGATGCAGTGGAATGTTTGAAAAGCAAGGGTTATGTCTAA 960 0.476 MSKVVCVTGASGAIGSWVVKLLLDRGYTVHATVQDLKDEKETKHLEAMEGAKGRLRLFEMDLLDTNSIATTVKGCNGVIHLACPNVIGQVTDPEKQILEPAIKGTVNVLKAEKEAGAERVVATSSISAITPSPNWPADKIKGEDCWTDLEYCKEKGLYYPIAKTLAEKAGWEFAKETGFDVVMINPGTALGSLISPRINSSMVVLAGVLKGDKETYEDFFMGMAHFKDIALAHILAFENKKAAGRHLCVEAIRHYSDFVAIVADLYPEYNVVRVTKDTQPELLRANNASKKLIDLGLNFTPAEQIIKDAVECLKSKGYV* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1040 319 Pfam NAD dependent epimerase/dehydratase family 5 239 IPR001509 -
Lja6g1040 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 313 IPR036291 -
Lja6g1040 319 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 3 311 - -
Lja6g1040 319 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 311 - -
Lja6g1040 319 CDD FR_SDR_e 5 297 - -
Lja6g1040 319 Gene3D - 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1040 Lja-Chr6 24367041 24371961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1040 3 319 Monolignol Biosynthesis Gene Families AT5G58490 64.038 3.40e-158 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1040 - - lja:Lj0g3v0250699.2 563.918