Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1020 ATGGCTGAAGAAACAGAACTTGAAACGCTAAATCAGCTGAGTTCCTATGGAAACATTGGCCAAGAGCTACTAGTATGTCAATACATTGAGAAACACGCAACCAAGGGCATATATCTTGGAGATAACCCCCTCCATCACACCACTGCTATCCTAATAATTCAGATTATTTTTATATTTGTTGTTGGTAAAATTACTCATCTCTTGTTGAAACCCTTTCATCAAACCCAGCTCATTTCACAGGTTGTGGCTGGCATCATCTCGGGTCCTATATTACTTGGTCGATACCAAAAAAGTTTTGACATGGTATTTCCAACGGCAAGCTTAATGACACTTTCAACATTTGCAGAATTTGGCATGATAATTTACTTCTTTAAAATGGGGGTGCAGATCAATCCCAAACAGATTTTAAAGATTGAAAAGCAGGCGGCTATAATTGGTTTAGTGGGACACATATCTTCTATAGTGTTTGGTAGTGTAGTTTTAACTCTTGTTCAAAGATTCTCCCCTCTCAAGGATGAAGTGGCTGGTGTTGAAGGTTTGATATTTCTTGAATCATTGACTGCATTTTCTACTATAAGTAGAGTTCTCAGCGAGATGAACATTCTCAATTCAGATATTGGACGTGTAGCTTTATCTGCTTCCATGGTTAATGATGCAAGCTCGTGGATTTTGTTTTTTGTTATAGTCAACGGTGCTAGAGCCTTACAAGAAACGTCATATATACCTCTTCTAGCAGTGGTTGTGTCAACATGTTTTTTCGCCATCGTATTTTTCCTACTAAAGCCATTGGTTATATGGATTTCCTATCGTAATCCACAGGGAAAGCCTATGAGAGAAAGCCATTTTTTGGCAATTATGTCTATACTTCTATTTCTTGGATTCTCCGCTGAAGTTGCTGGACAACCTGCTTTTCTTGTTGCTTTTTGGTTTGGTTTGATCTTGCCTGATGGTCCCCCTTTAGGTTCTGTTTTGGCTGAAAGAATTGATACTGTTGGTTCTACTCTAATTGTTCCAGCTTTCTGTACTATAAGTGGGTTGAGAACAATTGTTTTCCCAATAACATCACAGGCAATATGGATAGAGGTTGTTTTACTTGCAGTACAAATAGGAAAGTTTACAGGCACCATTTTATCCTCACTTCATTTTCAAATTGAATTTTGGGATTCTGTTGCGTTGTCTCTAATCATGTGTTGCAAAGGTCTTACAAATCTCGCCTTCTACTCCTTCTTATCATACAATAAGGTCATCGGAAAAGTACCTTTCACCCTTGTGATATATACCATGGTGGGTTTAACTTGGTTTGCAACTATTGTTATTCATTACATATATGATCCTTCAAGGAAATACAAAAATTACATCAGAAAATCAATTAAGGACTCCGAGAAGGACCATGAATTTAGAGTACTTGTCTGCGTCTACAATGAAGAAAATGTATATCCTGTGATCAATCTTCTTCAATCCTCTAACCCTTCAAAGGCTTCACCACTTTCTGTCTTTGTTTTACATCTCATGGAGCTATCAGGTAGAGCAGCCCCCATCCTTAAAAAAAATGATAAGACTAACAAGTCAAATCTTTATGGAGAGGATTCATCTCAACACATAAACAATGCCTTTGATCTATTTCAACAACACAACAAAGGGAATGTTATGTTGCAGTGCTATACTGCAATTGCACCATTTTCAAGCATGCACGACGACATATGTTGCGTTGGAATGGATACAAATTCTCACTTTGTAATTATGCCATTCCATAAGCGATGGTCCATCAATGGAAATGCAGAGGTGTCCAATGCTTTAATTCGAACAGTAAACCAAAAAGTTTTGAGTAAAGCTCCTTGTTCAGTTGGAATCTTAATTGATAGAAGTGAAATGCGAGGAAAAATGTTAGTTATTTATGAGACATCACTTTGTGAAATTGCAATGATCTTCTTAGGTGGTGCAGATGATCAAGAGGCACTTGTTTTTAGTTTGCACATGGCTCAACATCCAAATATTAGACTTACGGTGTTTTGGATAAGGGTCAAAATGAAACACAAGCAAAGGAGTATGGAGAACCCTTATATTGAAATTATGGAGTATATAAAGTACAATCCTAACCTTAAAGGAAAGGTGACCTTCAAGGAGGAGATTGTGGAAGATGGGTTAGGAACAACACATGTTATCAGAACAATGGAGGGAAATTTTAATTTGGTCATAGTGGGTAGACATCATATAATAAACTCTCCATGTACACTAGGCTTGACAGAATGGTGTGAACTCCCAGAGCTCGGGCCAGTTGGAAACCTCCTAGCCTCAGATTTTACATTTTCAGTTTTGGTGGTGCAACAACAACCCTTCAACTTCGATTTTCCTGTGTATTAG 2361 0.3774 MAEETELETLNQLSSYGNIGQELLVCQYIEKHATKGIYLGDNPLHHTTAILIIQIIFIFVVGKITHLLLKPFHQTQLISQVVAGIISGPILLGRYQKSFDMVFPTASLMTLSTFAEFGMIIYFFKMGVQINPKQILKIEKQAAIIGLVGHISSIVFGSVVLTLVQRFSPLKDEVAGVEGLIFLESLTAFSTISRVLSEMNILNSDIGRVALSASMVNDASSWILFFVIVNGARALQETSYIPLLAVVVSTCFFAIVFFLLKPLVIWISYRNPQGKPMRESHFLAIMSILLFLGFSAEVAGQPAFLVAFWFGLILPDGPPLGSVLAERIDTVGSTLIVPAFCTISGLRTIVFPITSQAIWIEVVLLAVQIGKFTGTILSSLHFQIEFWDSVALSLIMCCKGLTNLAFYSFLSYNKVIGKVPFTLVIYTMVGLTWFATIVIHYIYDPSRKYKNYIRKSIKDSEKDHEFRVLVCVYNEENVYPVINLLQSSNPSKASPLSVFVLHLMELSGRAAPILKKNDKTNKSNLYGEDSSQHINNAFDLFQQHNKGNVMLQCYTAIAPFSSMHDDICCVGMDTNSHFVIMPFHKRWSINGNAEVSNALIRTVNQKVLSKAPCSVGILIDRSEMRGKMLVIYETSLCEIAMIFLGGADDQEALVFSLHMAQHPNIRLTVFWIRVKMKHKQRSMENPYIEIMEYIKYNPNLKGKVTFKEEIVEDGLGTTHVIRTMEGNFNLVIVGRHHIINSPCTLGLTEWCELPELGPVGNLLASDFTFSVLVVQQQPFNFDFPVY* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1020 786 PANTHER CATION/H(+) ANTIPORTER 14 37 778 - -
Lja6g1020 786 PANTHER CATION/H + ANTIPORTER 37 778 - -
Lja6g1020 786 Pfam Sodium/hydrogen exchanger family 53 440 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lja6g1020 786 Gene3D - 48 451 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1020 Lja-Chr6 23640784 23647073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1020 6 777 Antiporter Super Family AT1G06970 37.084 1.82e-170 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1020 - - gmx:100804488 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1020 6 23640784 23647073 Lja6g1020 6 23640784 23647073 ECH
Lja6g1020 6 23640784 23647073 Lja6g0741 6 16230838 16246292 PCT