Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1017 ATGACCACTTCCTTCTCTGACCACCGCCGCACTTCTCCCGCCGACCACAACCTCGGAGGCTCCGAAAGGCCTCATCAGCTGTTGTTGTCGGATCCAACAGGTTCTGGTGCGCCCAAATTCAAGTCTACACCTCCTCCACTTCCCATTTCTCCTTCTTACTTTTCACTTCCTCCTGGGTTGAGCTTTGCAGAGCTGCTTGATTCCCCTGTTCTCCTCAACTCAAATTCTAATATTTTGCCATCTCCAACAACTGGTACATTTGGCTTCAATTGGAAGATCAGTTCTGGGGAAAACCATCAGAATAATGTCAAGGAAGAAGATAAAAGCTTCCCAAATTTCTCCTTCAAAACCCAATCACAGCCTCCTATTCCTTCCACAGCAGGGTTTCAATCTTCAAACAGCATAGCTCAAAATGGATGGGCTAAACAAGATGAATTTTCTTCTGGAATGAGTATGGGGATGGTGAAAACTGAAGCCTCTTCTTCTATACAGAGTTATAATAACATTAACAACAATTACCATCCACAACAAGTTCAGACCCTGAGTAGAAGGTCAGATGATGGGTACAACTGGAGGAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAGAATCCAAGAAGCTACTACAAATGCACATACCCCAAATGCCCAACAAAGAAAAAAGTTGAGAGGGCTTTAGATGGACAAGTTACTGAGATTGTTTACAAAGGCACTCATAACCATCCCAAGCCTCAGGCTCCTCATAAGAGGAACAGCTCATTCACTACCTCAAATCATGTCAGCACTGAAATACAAGGCGCCACTCATGTCAGTGGACAAATGGATTCTGTTGCAACCCCTGAAAACTCATCATTGTCAATGGGGGGTGATGATTTTGAACAGAGTTCTATGAGTAAATCCGGAGGAGAGGAGCTTGATGAAGATGAACCTCATGGCAAAAAATGGAGAATGGAGGGTGAAAATGAGGGCATGTCAGCAGCAGGAAGCAGAACGGTGAAAGAATCCAGAGTTGTGGTTCAAACAACCAGTGACATTGATATTCTTGATGATGGATACCGATGGAGGAAATATGGGCAGAAAGTAGTAAAGGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACAATCCCTGGATGCCCAGTGAGGAAGCACGTGGAGCGAGCCTCACAGGATCTAAAAGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGCAGTCCCTCCACCACGTGGCAGTGGTGGTGGTAGCTACTCTTCTATCAATAGACCAGTGCAAACCAATACCACAAACAACACAGCAACAAGTGTAGCCTCTGCTATGACTCTGAGTTCTCAACACACTAATAACACTTCCTCTATCAACAATTCTCTTCAAGGACAAGCAGTGTTCACTTCTGAGATGCCTCAGAGCCAGAGCCAGGGAAACATTGGATTCCAAGGGTTTGGTGGGAATGCGATAGAATCTTATTACATGAACTTGAATCAGCAGCAATCTGAGGATGTTTTTTCTTCCGGGGCCAAGGAGGAGCCTGTAGATGACTCGTATTTTGAATCTTTGCTATGTTAA 1569 0.4461 MTTSFSDHRRTSPADHNLGGSERPHQLLLSDPTGSGAPKFKSTPPPLPISPSYFSLPPGLSFAELLDSPVLLNSNSNILPSPTTGTFGFNWKISSGENHQNNVKEEDKSFPNFSFKTQSQPPIPSTAGFQSSNSIAQNGWAKQDEFSSGMSMGMVKTEASSSIQSYNNINNNYHPQQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPKCPTKKKVERALDGQVTEIVYKGTHNHPKPQAPHKRNSSFTTSNHVSTEIQGATHVSGQMDSVATPENSSLSMGGDDFEQSSMSKSGGEELDEDEPHGKKWRMEGENEGMSAAGSRTVKESRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTIPGCPVRKHVERASQDLKAVITTYEGKHNHAVPPPRGSGGGSYSSINRPVQTNTTNNTATSVASAMTLSSQHTNNTSSINNSLQGQAVFTSEMPQSQSQGNIGFQGFGGNAIESYYMNLNQQQSEDVFSSGAKEEPVDDSYFESLLC* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1017 522 Pfam WRKY DNA -binding domain 186 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1017 522 Pfam WRKY DNA -binding domain 349 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1017 522 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 28 477 - -
Lja6g1017 522 SUPERFAMILY WRKY DNA-binding domain 340 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1017 522 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 28 477 IPR044810 GO:0003700
Lja6g1017 522 MobiDBLite consensus disorder prediction 238 313 - -
Lja6g1017 522 Gene3D WRKY domain 172 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1017 522 SUPERFAMILY WRKY DNA-binding domain 184 244 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1017 522 SMART WRKY_cls 185 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1017 522 SMART WRKY_cls 348 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1017 522 ProSiteProfiles WRKY domain profile. 186 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1017 522 MobiDBLite consensus disorder prediction 1 44 - -
Lja6g1017 522 Gene3D WRKY domain 335 401 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1017 522 MobiDBLite consensus disorder prediction 247 299 - -
Lja6g1017 522 ProSiteProfiles WRKY domain profile. 343 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1017 Lja-Chr6 23340828 23344475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1017 65 453 WRKY Transcription Factor Family AT2G38470 47.101 1.99e-103 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja6g1017 WRKY 3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1017 K13424 - gmx:100127393 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1017 6 23340828 23344475 Lja6g1017 6 23340828 23344475 ECH