Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1008 ATGGCGCCAGCTCAGAAACCACTTCTGAAGCTTGAAGAGAAAGATGTTGTACTCATCAAACCATCAAAATCATCTCCTTCCTCTGTTCTTCCTCTGTCCACTCTTGACAATAGACCTGATGTCAATTTCCTATGCCAAACTGTTCACGTATACCGACCAACAGTGCATGACTCTGATTCAATAGACCCTGCTCAAGTGGTCAAAGAAGCACTCTCAAAGGCTTTGATTTATTACTACCCTCTTGCAGGGAGGCTAGTAAGACATGGTGATGGAAAACTCAGAGTCCTTTGCGATGAAGAAGAATATGGTGTTCCATTCATAGAGGCAGTTGCTAGCTGCAGCCTTTCTTCTGTTGATTACTTGGATGGTGCTGACACTGAATTTGCAAGACACTTGGTGTTTGATCTTCCTACTGAGGATGAACAAGGTTACCAATACCCATTGGTGATCAAGTTGACCAAATTTCTTTGTGGAGGTTTCACAATTGGATTGGGAATGTCACATAGTGTTGTTGACGGCATCGGAGGATTTCAATTCTTCCGCGCGGTTGTTGAACTCGCGAGCGGAAGAAGCGAGCCCTCCGTGAAGCCTGTGTGGGAGAGACACAGACTGGTGGGATTAAAATCAATCACAGATGAAGAAACATTGACACGGCAACCCATGAATAACGCATCTTCGGCGGTTTCACCGTTTCTGCCAAAAGATGAACTCATTCAAGTCTGTTTTAAGGTGAGCGGTGAGACCTTAAAAAGACTCAAGTGGAGTTTGGAAAAGGAAAGTAATGATGGGAGTATCGTGACGAGTTTCGAATCACTTGGAGCCTACGTGTGGAGGTCGAGAACGAGAGCGTTGGAACAAAACAACGACGGTAAAACGCAGTTTTCTTTCCTTGTGGGAGCAAGAAAGCACTTGTTGCATGAGTCTCCTTTACTAGAAGGGTACTACGGGAACGCGATTGTGGATGCGTACGTAGTACTGACAGTAAAGGAGCTCAACAAAATGTCGCTCTCTGATATTGTGAAACGTATCAAAGAAGCTAAAAAAGCTGCTTTTGCTGCGGATTATGTTAAAAACTTTATGAACACTAAGGAGTCCAATCCAGTAGTGGATTTTACCCTGTATGGTAACGGTGCAATCATATTTCTAACTGAGTGGAAGCATGTGGGTTTCTCACAAGATGTAGATTTTGGAGGGAATGAAGCTGTGAATATGGTACCTGCCCCTAGCGGCTTGTTTGGCGGTCCGCCTTCGTGCATCTTCGCGCCTCCTAACAAATTGGATGATCCGTCAATGAAAGGAGGAGTTAGAATTTTCACCACGCTCCCAGTTGATGCTGTGGCAAAGTTCAGGAAGGAAATGGAAGCCATGAATGCGATCTGA 1380 0.4478 MAPAQKPLLKLEEKDVVLIKPSKSSPSSVLPLSTLDNRPDVNFLCQTVHVYRPTVHDSDSIDPAQVVKEALSKALIYYYPLAGRLVRHGDGKLRVLCDEEEYGVPFIEAVASCSLSSVDYLDGADTEFARHLVFDLPTEDEQGYQYPLVIKLTKFLCGGFTIGLGMSHSVVDGIGGFQFFRAVVELASGRSEPSVKPVWERHRLVGLKSITDEETLTRQPMNNASSAVSPFLPKDELIQVCFKVSGETLKRLKWSLEKESNDGSIVTSFESLGAYVWRSRTRALEQNNDGKTQFSFLVGARKHLLHESPLLEGYYGNAIVDAYVVLTVKELNKMSLSDIVKRIKEAKKAAFAADYVKNFMNTKESNPVVDFTLYGNGAIIFLTEWKHVGFSQDVDFGGNEAVNMVPAPSGLFGGPPSCIFAPPNKLDDPSMKGGVRIFTTLPVDAVAKFRKEMEAMNAI* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1008 459 Gene3D - 232 453 IPR023213 -
Lja6g1008 459 Gene3D - 9 212 IPR023213 -
Lja6g1008 459 PANTHER ACYL TRANSFERASE 4 7 456 - -
Lja6g1008 459 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 7 456 - -
Lja6g1008 459 Pfam Transferase family 11 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1008 Lja-Chr6 22769777 22771156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1008 9 407 Monolignol Biosynthesis Gene Families AT5G48930 28.640 1.51e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1008 K20240 - gmx:100783730 443.736