Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1006 ATGTCTTCTACTACACTTCAATGGCTAAGCCTTGTGGGTATTGTTTGGCTCCAAGCCATAAATGGGACAAATACCAATTTTCCTGCTTACTCTTCCCAGCTGAAGGAGCTTCTTTCTATTTCTCAAGTGCAGCTCAATAACCTTTCTTTTGCCTCTGATGCAGGGAAATTTCTTGGCTGGTTTTCTGGCCTTGCTTCTCTTTACCTCCCCCTCTGGCTTGTCCTCATAATCGGTTCGGTTCTTGGGTTAATCGGCTATGGAGTGCAATTTCTCTTTATAACTAACCACATTGCCTCTCTGTCTTATTGGCATGTTTTCTTGCTAACGTTTCTAGCTGGAAATAGTATTTGTTGGATTAACACAGTTTGCTATGTTGTTGCCATAAGAAACTTCCTATCTGATAGCAAAGTTGCTGTGGGATTAACAACCAGTTACCAAGGATTAAGTGCAAAGATCTATACCAATATTGTTGAAGCTGTTTCTCCAGATAAAAAAGCTGTAAACTTTCTCTTATTGAACTCTCTAATACCAATTGTAGTTAGCCTAATAGTAGCTCCTTTTCTCAGAGAAATTGAAGTTACAAGCTCCAAGCACACAGGTGTTGGATTTGCTGTTATGTTTGTTATTACAATTGCCACTGGAATTTATGCTGTTATGAGCAGCTTGCAATTTGTCACAAGCAAACTATCCTCACTGGGAATCCTGATTGGTCTTATAGTTTCCCTTCTCTTCGCTCTATTAGTCCCACCTTCACTTAAGATCAAGAATCTAGCAGGGGCATGGCACAAAAATAGAGAAAGACTTAGAGTCTACCATTTTACTATGGAGGAGGGTACTAATGAAGAGAGGGCAGAGGATGAGGTGAAAGATGGTGAACATAGTAGAGAAGTTTCAGAGCTTAGTGTTATGGAAGAAATTGGAGTGAAATTAATGCTTAGAAAAGTGAATTTCTGGTTATACTTCTTTATCTATCTTTTTGGTGCAACAATTGGTTTCGTATTTCTCAATAATTTGGGACAAATAGCTGAGTCCAGGGGTTGCTCTGCCACTTCATCTTTGGTGTCTTTGTCTTCATCTTTTGGGTTCTTCGGCCGTCTGATCCCGTCACTCATGGATTACTTCTACAGGGGAAAACGTACAATTTCAAGACCTGCCTCAGTGGTGGCAGTGATGATTCCAATTACAATTGCATTCTTCTTACTTCTCAATAAAACAGACATTGCCCTTTACACAAGCACTGCAGTAATTGGAGTGTGTACTGGAGCAATCACTTCCATAGCTGTTTCCACAACAACTGAGTTATTTGGAACCAAACATTTTTCAGTGAATCATAATGTGGTCGTGGCCAACATCCCCATTGGTTCGTTTCTGTTTGGCTACTCTGCTGCAATTCTTTACAATAAGGAAGGGAATGAACATGGGAAGTGCATGGGCATGGAGTGCTACAGTAACACGTTTCTCATATGGGGCTCCTTTTGCTTCCTTGGAACTGTCTTGGCTTTGATTCTTCATGCTAGGACACGCCAGTTTTATTCACAAAAACAATAG 1548 0.4044 MSSTTLQWLSLVGIVWLQAINGTNTNFPAYSSQLKELLSISQVQLNNLSFASDAGKFLGWFSGLASLYLPLWLVLIIGSVLGLIGYGVQFLFITNHIASLSYWHVFLLTFLAGNSICWINTVCYVVAIRNFLSDSKVAVGLTTSYQGLSAKIYTNIVEAVSPDKKAVNFLLLNSLIPIVVSLIVAPFLREIEVTSSKHTGVGFAVMFVITIATGIYAVMSSLQFVTSKLSSLGILIGLIVSLLFALLVPPSLKIKNLAGAWHKNRERLRVYHFTMEEGTNEERAEDEVKDGEHSREVSELSVMEEIGVKLMLRKVNFWLYFFIYLFGATIGFVFLNNLGQIAESRGCSATSSLVSLSSSFGFFGRLIPSLMDYFYRGKRTISRPASVVAVMIPITIAFFLLLNKTDIALYTSTAVIGVCTGAITSIAVSTTTELFGTKHFSVNHNVVVANIPIGSFLFGYSAAILYNKEGNEHGKCMGMECYSNTFLIWGSFCFLGTVLALILHARTRQFYSQKQ* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1006 515 Gene3D MFS general substrate transporter like domains 5 508 IPR036259 -
Lja6g1006 515 SUPERFAMILY MFS general substrate transporter 7 509 IPR036259 -
Lja6g1006 515 Pfam Nodulin-like 7 249 IPR010658 -
Lja6g1006 515 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 2 514 - -
Lja6g1006 515 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 2 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1006 Lja-Chr6 22688178 22690234 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1006 1 514 Nodulin-like Gene Family AT2G30300 49.049 2.87e-152 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1006 - - gmx:100800763 766.918