Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1004 ATGGCTTTTCACTCACATTATTATGAAAAATTTTGGTTCTGCATTTTGTTTTCCTTGTTGGCCATAGCTATATCTGCTGATCAGCTAGCTTCAGATTTCTATGGCACAACATGCCCCAAAGCCCTCTCCACCATTAAATCTGCAGTGGTCAGTGCAGTTGCCAAAGAACACCGCATGGGCGCGTCCTTACTCCGTCTTCATTTCCATGACTGCTTTGTTAATGGATGTGATGCATCGGTTCTATTAGATGACACTTCGAGTTTCACGGGAGAGAAGACAGCTGGTGCAAATGTGAACTCCCTGAGGGGTTTTGAAGTAATTGACGACATCAAAACTCAGGTGGAGTCTGCTTGTCCTGGAATTGTTTCTTGTGCAGATATTGTTGCTGTTGCTGCTCGTGATTCTGTTGTAGCATTGGGAGGTCCATCATGGAGTGTTGGATTAGGCAGAAGAGACTCAACTACTGCAAGCAAAGATGGTGCCACAAGTGATATCCCATCCCCTCTAATGGATCTCAGCGACCTCATCTCTGCTTTTTCAAATAAAGGCTTCACCACCCAAGAGATGGTAGTCCTCTCAGGAGCTCACACAACAGGGCAAGCCAGGTGCCAGATGTTCCGAGGCAGGATTTATAACGAGACCAACATTGATTCAGACTTTGCAACATCAGTGAAGTCAAATTGCACAAGCACTGGGGGTGACAGCAACCTCTCCCCACTTGATGTTACCACCAAAGTGTTATTTGACAATTCTTATTTCAAGAATCTTGTAAACAAGAAAGGACTCCTGCATTCTGATCAGCAGCTCTTTAGCGGCGGTTCAACTGACTCACAGGTCACTACCTATAGCACAAGCTCTTCCACTTTCAGTGCAGACTTTGCAAGTGCCATGGTGAAAATGGGAAACCTCAGTCCTTTAACTGGGAAAAATGGTCAGATTCGTACCAATTGCCGCAAAGTCAACTAA 966 0.4513 MAFHSHYYEKFWFCILFSLLAIAISADQLASDFYGTTCPKALSTIKSAVVSAVAKEHRMGASLLRLHFHDCFVNGCDASVLLDDTSSFTGEKTAGANVNSLRGFEVIDDIKTQVESACPGIVSCADIVAVAARDSVVALGGPSWSVGLGRRDSTTASKDGATSDIPSPLMDLSDLISAFSNKGFTTQEMVVLSGAHTTGQARCQMFRGRIYNETNIDSDFATSVKSNCTSTGGDSNLSPLDVTTKVLFDNSYFKNLVNKKGLLHSDQQLFSGGSTDSQVTTYSTSSSTFSADFASAMVKMGNLSPLTGKNGQIRTNCRKVN* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1004 321 Gene3D Peroxidase, domain 2 166 300 - -
Lja6g1004 321 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Lja6g1004 321 ProSiteProfiles Plant heme peroxidase family profile. 28 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 CDD secretory_peroxidase 28 320 IPR033905 GO:0004601|GO:0042744
Lja6g1004 321 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 Pfam Peroxidase 47 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 SUPERFAMILY Heme-dependent peroxidases 28 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PANTHER PEROXIDASE 72-RELATED 23 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PANTHER PEROXIDASE 23 321 - -
Lja6g1004 321 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lja6g1004 321 Gene3D - 32 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1004 Lja-Chr6 22558269 22560594 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1004 28 321 Peroxidase AT5G05340 63.514 2.31e-139 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1004 K00430 - gmx:100818176 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1004 6 22558269 22560594 Lja6g1004 6 22558269 22560594 ECH
Lja6g1004 6 22558269 22560594 Lja1g3285 1 40737975 40741398 ECH