Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1002 ATGAAGAAGATCTTTTCATCGGAGACCATGGACATCCCCGACGGCGTGAGCATCAAGGTTGAAGGCCCTCGTGGGGATTTCCAGCTCATCACCGATGAGAACGGCAAGAAGAAGCTCAAGATCGAGGCCTGGTTCGGTACCCACAAGATGAGGCTCATCTATGCCCATTTTCCCATCAATGCTAGCATCACTAATCACAACAAGGGCATCAAGATCCATAGCTTTCTACTTTTCGTGAGGAAAGTGGATATGCTTGATGGAGTTTCCATTGTGCAATCTGAGAAGGTGAAGGATGAGTTGGTTTTCGATGGAAATGACATTGAGCTTGTTTCTAGGTCATGTGCCCTTATCAATCAGAACAAGGATATCAGGAAGTTTCTTGATGGTATTTATGTTAGTGAGAAGGGGACCGCATTAATAAAGAAGGTACCTTTTTATCACCTTTTAAGTTCATTGATGATTTCTGTAAAGATTGTAATATATGATAGATAG 492 0.4248 MKKIFSSETMDIPDGVSIKVEGPRGDFQLITDENGKKKLKIEAWFGTHKMRLIYAHFPINASITNHNKGIKIHSFLLFVRKVDMLDGVSIVQSEKVKDELVFDGNDIELVSRSCALINQNKDIRKFLDGIYVSEKGTALIKKVPFYHLLSSLMISVKIVIYDR* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1002 163 PANTHER RIBOSOMAL PROTEIN L6-RELATED 1 49 - -
Lja6g1002 163 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 48 136 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja6g1002 163 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 49 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja6g1002 163 PANTHER RIBOSOMAL PROTEIN L6-RELATED 48 136 - -
Lja6g1002 163 Gene3D - 45 141 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lja6g1002 163 SUPERFAMILY Ribosomal protein L6 48 135 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1002 Lja-Chr6 22515173 22516085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1002 1 135 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 57.754 1.28e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1002 K02940 - gmx:100306058 195.667