Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0997 ATGGCTGTGCCACTATCATCATCATCATCATCATCATCATCTTCCTCTACTTTATTCACCTATGATGTGTTCATAAGCTTCAGAGGCTATGATACTCGTCATGGTTTCACTGGTAATCTCTACAAAGCTCTTTGTGACAAGGGAATCCGCACCTTCTTTGATGATAAAGAGCTGGAGAGAGGGGAAGAAATCACACCAGTACTTGTCAAAGCCATTGCTGAGTCCAGGATTGCTATCCCTGTATTCTCAGCAAGCTATGCTTCTACTTCCTTTTGCTTGGACGAACTTGTCACCATCATTGACCGCATTAAGAACCAAGGTCGGTTGGTCTTGCCTGTCTTTTATGATGTTGATCCTTCTAAGGTGAGACATCAAACTGGGAGTTACAAAGAAGATCTGGATAAGCATCAGGTGAAGTTTGAACAGAATAAGGAAAAGTTCACGGATAACATGGAGAGGTTGAAGAAATGGAAGACAGCTCTTAGCCAAGCAGCCAACTTGTCCGGCTATCATTTCAATCTTGGGGATGGATATGAATATGAGTTTATTGGAAATATAGTTAAAGAAGTCTCCAATAAGATCAATCGTGTTCCCTTATTTGTTGCAAAATTTCCCGTTGGATTAGATTCTAAAGTGCTAGAAGTAATATCTCTTCTAGATGTTGCATCCGATGATGGGGTTTGCTTGGTAGGGGTTTACGGATTTGGAGGAGTTGGGAAAATAACACTTGCACGAGCAGTTTACAATTCCATTTTTGACAACTTTGAATGTTTATGTTTTCTTCATAATGTGAGAGAAAATTCAAGCAAATTGGAGCGTCTCCAAGAGAAGCTTCTTTCTAAGACAGTTGAACTTGCAATTGACATAGGAGATGTCAATGAAGGAATTCCAATAATAAAACAAAGGTTACAACGAAAGAAAGTTCTTTTGGTTCTTGATGATGTTGACCAATTGAAGCAGTTGCAGGCTATGGTTGGAGGAATTGATTGGTTCGGTCCAGGCAGCAGAGTTATCATTACCACACGAGACAAAAATTTGCTAACAATCCATGAGATTGAAAGAACATATGAAGTAAATGTATTAAATGAGAAAGAAGCTCTTGATTTGTTGACCTTGAATGCTTTCAAAAAGAACAAAGTTGATTCAAGTTACAAGGACGTTATAAATCGTGCAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACTTGTTTGGAAAAAATATAGCAGCATGGAATAATACATTAAGTCGGTATGAAAGGATTCCGGATAAAGATATCCAACAGATACTAAAAGTGAACTTTGATGCTTTGGAGGAGGAAGAAAAGAATGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGGCATCCATTGGTTGAGGTTGAACATATACTCCATGCTCATCATGGTGAGTGTATGAAACCTCACATTGGAATATTGGTTGAAAAGTCTCTTGTAAAGATCAGTTCGAATGATGAAGTAACATTACATGACCTGATTGAAGACATGGGTAAAGAAATTGTTCGAATAGAATCAACAAAAGAGCCTGAGAAGCGTAGTAGGTTATGGAGCCATGAAGATATACTTCAAGTTTTAGAGGATGAAACGGGAACCAGAGATATTGAAATCATCTGCCTGGATTTTTCCTTGACGAGCGAAGAAGAAATAGAATGGAATGGAAAGGGCTTCGAGAATATGAAAAATCTCAGAACACTTATTATTAGAAATGCTCATTTTTCTAAAGCTCCCGAACATCTTCCAAATAGTTTCAGGGTATTGGAATGCGAAAGATATCCTTCAAAGTATTTACCATCTAACTTTCATGCGAAGAAACTTGCCATATGTAAGTTACCCAGATATTGCTTTGTTTTATCCAACTTGGCTGGGTTATTGAAGACAGCACCAAGAAGCCCGTGA 1932 0.3825 MAVPLSSSSSSSSSSSTLFTYDVFISFRGYDTRHGFTGNLYKALCDKGIRTFFDDKELERGEEITPVLVKAIAESRIAIPVFSASYASTSFCLDELVTIIDRIKNQGRLVLPVFYDVDPSKVRHQTGSYKEDLDKHQVKFEQNKEKFTDNMERLKKWKTALSQAANLSGYHFNLGDGYEYEFIGNIVKEVSNKINRVPLFVAKFPVGLDSKVLEVISLLDVASDDGVCLVGVYGFGGVGKITLARAVYNSIFDNFECLCFLHNVRENSSKLERLQEKLLSKTVELAIDIGDVNEGIPIIKQRLQRKKVLLVLDDVDQLKQLQAMVGGIDWFGPGSRVIITTRDKNLLTIHEIERTYEVNVLNEKEALDLLTLNAFKKNKVDSSYKDVINRAVTYASGLPLALEVIGSNLFGKNIAAWNNTLSRYERIPDKDIQQILKVNFDALEEEEKNVFLDIACCFKGHPLVEVEHILHAHHGECMKPHIGILVEKSLVKISSNDEVTLHDLIEDMGKEIVRIESTKEPEKRSRLWSHEDILQVLEDETGTRDIEIICLDFSLTSEEEIEWNGKGFENMKNLRTLIIRNAHFSKAPEHLPNSFRVLECERYPSKYLPSNFHAKKLAICKLPRYCFVLSNLAGLLKTAPRSP* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0997 643 Gene3D - 18 191 IPR035897 -
Lja6g0997 643 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 170 IPR035897 -
Lja6g0997 643 ProSiteProfiles TIR domain profile. 19 194 IPR000157 GO:0007165
Lja6g0997 643 Pfam NB-ARC domain 211 422 IPR002182 GO:0043531
Lja6g0997 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 454 IPR027417 -
Lja6g0997 643 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 23 627 - -
Lja6g0997 643 PRINTS Disease resistance protein signature 569 585 - -
Lja6g0997 643 PRINTS Disease resistance protein signature 395 409 - -
Lja6g0997 643 PRINTS Disease resistance protein signature 229 244 - -
Lja6g0997 643 PRINTS Disease resistance protein signature 302 316 - -
Lja6g0997 643 SUPERFAMILY "Winged helix" DNA-binding domain 431 538 IPR036390 -
Lja6g0997 643 Pfam TIR domain 21 195 IPR000157 GO:0007165
Lja6g0997 643 Gene3D - 360 444 IPR042197 -
Lja6g0997 643 SMART till_3 20 167 IPR000157 GO:0007165
Lja6g0997 643 Gene3D - 192 355 IPR027417 -
Lja6g0997 643 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 627 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0997 Lja-Chr6 22219116 22222248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0997 21 626 WRKY Transcription Factor Family AT4G12020 28.981 9.98e-63 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0997 - - gmx:100780257 773.852