Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0996 ATGGGGATATCATTGTTAAAAGTGCTTGTTAATAGCATATCCTCATTTTTGCATTTATCATTTTCTGGTAATATAAACTTAGAACCAGTCTCTAAGTATTACCAGAAGGCAGAGGATATACTTAAGTTGTTGAAGCCGATCATTGATGCGATTGTTAATTCTGAGTTCGCTTCTGATGAAGTGCTAAGCAAGATGTTTGAAGAACTTGCTCACACTGTTGATGAATTAAAGGAGTATGTTGATAATTGGCACCTATTGTCTAGCAAAGTTTATTTTGTTATGCAAGTTGAACCCTTATTATCTAGGACCTGCACTTCAGGGCTTAATATTTTACAGTGGCTGAAGGCTTCTCAGCTATGTTCTCATGGTGAATTGAGTTCTGAACATTTAGAGCACTGTGTTCAGAAATTTAAGCTTTTGGGTCATGAAGAAACCTCATCAGTCATTAAGGAAGCTATTGCGGAACAACTGGACGGTGTGGGGCCCAGTTCGGAGATCCTGGCACAAATTGCTGATAGCCTGGGCCTAAGGTCTAATCAGGAGGTTCTGATTGAGGCTGTGGCCCTAGAAAAGTTGAAGGAGAATGCTGAACAAACTGAAAAGACTGCAGAAGCTGAATACATTGATCAAATGATTGCTATTGTAACACGTTTGCATGAGCGTCTTGTTATGCTCAAGCAAGACCAGAGTTGCAGCCCAGTTCCTGTACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAATTGATGACTGATCCGGTGATTGTGGCCTCAGGGCAAACTTATGAGCGGGCTTTTATCAAGAACTGGATTGCTCTTGGCCTTACTGTTTGTCCAAAGACACATCAGACCCTGGCTCACACGAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGCGAGTCAAACAATGTGAAATTGGTTGATCCCACAAAGTCCACGAATTTGAATCAACCATCTATCCCTCATGGGTATATGGAGTCTGGTACAACCAGAGAATCTCCTGTTTTACCTCATTCCAGGAACAACCAACCATCCTCACCTGAGTCAGCTCGTTCTCGTTCTTTTAGTTCACCAGGTAATAACTTGACTTCTTCTGGTGGAATCCACAGAGAGGGAACATCACCTGTGCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGCATGGTAAACGGTCTTGCAAGAATATCACTTGTAGGTTCAGATGACAGGTCTGCTTGCTCAGATGAAAGCAGCATCGATTCAGTCGTTCAATCATCAATGTCACCATCTAGAATTGAATCGGCCACTGCCTTTAGCTCTGAACAATCTCAAACCCATGTTAGAGCTGTATCGGACTCCAGTGCTTTTTCTGGTGCAAATTTTCCTCAAGAAACACAAGGTGATGACAACAATGCCTCTCAGCTGTCAACGAGTCCTGGCTACAGCAGAGAAACTTCCGGTGAATTAAGTCCAGGGCCAGATGCTTCTACTGTTGCTGCCATGCCATCAGTGCATAGAGAACCTGAATTTCCACCCCGATTGATGGAGACAAGGTCTCGAAGCCAAGCTATTTGGAGGAGGCCATCAGAAAGACTTGGGCCTAGGATAATATCTTCTTCTGCCATTGAAACAAGAGCTGATCTTTCTGGAATTGAAGCCCAGGTTCGGGGTTTAGTTGAGGGCTTGAGGAGCTCTGATCTTGATACTCAGAGAGAGGCAACAGTAGAAATCCGCCTTCTTGCAAAGCACAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTAGCTTATTAGTTGAGTTACTTAAATCCACTGATACAAGAATCCAGGAAAACGCTGTTACTGCACTTCTCAACTTATCAATTAATGACAACAACAAAGCTGCTATTGCAAATGCTGGAGCAATTGAACCCCTGATTCATGTGCTTGAGACTGGGAGCCCAGAAGCCAAAGAAAATTCTGCTGCTACTCTTTTCAGCTTGTCAGTGATTGAGGAAAATAAGATTAACATTGGGAGGTCTGGGGCAATTGGACCACTAGTTGATTTATTAGGAAACGGAACCCCAAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGCTAATGGAGCCGGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTTTTAGCAAATCTTGCCACAATTCCGGAAGGAAGAAATGCAATTGGGCAGGAAGGTGGGATACCCGTTCTTGTCGAGGTTGTCGAGTTGGGTTCAGCAAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACATCTTTGCTTACACAGTAACCGATTTTTAAGCACGGTGCTCCAACAAGGAGCTGTTCCACCATTAGTAGCCTTATCACAGTCAGGCACCCCAAGGGCCAAAGAGAAGGCCCAGGCTCTCCTTAATCAATTTAGAAGCCAAAGACACGGGAATTCTGGAAGGGGCTGA 2511 0.4393 MGISLLKVLVNSISSFLHLSFSGNINLEPVSKYYQKAEDILKLLKPIIDAIVNSEFASDEVLSKMFEELAHTVDELKEYVDNWHLLSSKVYFVMQVEPLLSRTCTSGLNILQWLKASQLCSHGELSSEHLEHCVQKFKLLGHEETSSVIKEAIAEQLDGVGPSSEILAQIADSLGLRSNQEVLIEAVALEKLKENAEQTEKTAEAEYIDQMIAIVTRLHERLVMLKQDQSCSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIALGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLVDPTKSTNLNQPSIPHGYMESGTTRESPVLPHSRNNQPSSPESARSRSFSSPGNNLTSSGGIHREGTSPVHPRSTSEGSLSGMVNGLARISLVGSDDRSACSDESSIDSVVQSSMSPSRIESATAFSSEQSQTHVRAVSDSSAFSGANFPQETQGDDNNASQLSTSPGYSRETSGELSPGPDASTVAAMPSVHREPEFPPRLMETRSRSQAIWRRPSERLGPRIISSSAIETRADLSGIEAQVRGLVEGLRSSDLDTQREATVEIRLLAKHNMDNRIAIANCGAISLLVELLKSTDTRIQENAVTALLNLSINDNNKAAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKINIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVRHLVELMEPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0996 836 MobiDBLite consensus disorder prediction 405 519 - -
Lja6g0996 836 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Lja6g0996 836 MobiDBLite consensus disorder prediction 408 490 - -
Lja6g0996 836 Coils Coil 179 209 - -
Lja6g0996 836 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Lja6g0996 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 675 717 IPR000225 GO:0005515
Lja6g0996 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 593 635 IPR000225 GO:0005515
Lja6g0996 836 SUPERFAMILY ARM repeat 553 825 IPR016024 -
Lja6g0996 836 PANTHER U BOX DOMAIN-CONTAINING 7 832 - -
Lja6g0996 836 SUPERFAMILY RING/U-box 225 313 - -
Lja6g0996 836 CDD RING-Ubox_PUB 240 282 IPR045210 -
Lja6g0996 836 Gene3D - 534 831 IPR011989 -
Lja6g0996 836 Pfam Armadillo/beta-catenin-like repeat 623 662 IPR000225 GO:0005515
Lja6g0996 836 Pfam Armadillo/beta-catenin-like repeat 584 621 IPR000225 GO:0005515
Lja6g0996 836 Pfam Armadillo/beta-catenin-like repeat 666 703 IPR000225 GO:0005515
Lja6g0996 836 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Lja6g0996 836 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 832 - -
Lja6g0996 836 MobiDBLite consensus disorder prediction 312 392 - -
Lja6g0996 836 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 716 757 IPR000225 GO:0005515
Lja6g0996 836 SMART arm_5 745 785 IPR000225 GO:0005515
Lja6g0996 836 SMART arm_5 664 704 IPR000225 GO:0005515
Lja6g0996 836 SMART arm_5 705 744 IPR000225 GO:0005515
Lja6g0996 836 SMART arm_5 623 663 IPR000225 GO:0005515
Lja6g0996 836 SMART arm_5 582 622 IPR000225 GO:0005515
Lja6g0996 836 SMART arm_5 536 580 IPR000225 GO:0005515
Lja6g0996 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0996 Lja-Chr6 22193300 22199163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0996 196 836 U-box Gene Family AT2G23140 63.287 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0996 - - gmx:100811250 1299.26