Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0991 ATGGAGAGTAAATCAAATATCTTAATGGGAAGATATGAGTTAGGAAGATTACTAGGGCAGGGAACCTTTGGAAAGGTTTACTATGCACGGAGCGCAATAACTAACCAGGGCGTGGCTATTAAAATGATGGACAAAGATAAGGTTATCAAAACCGGGCTAGCTGATCGAATCAAGTGCGAGATATCTATTATGAAACTGGCTAGACATCCCAATATTATACAGCTTTTTGAGGTTATGGCCACCAAAAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGGGGTGAGCTCTTCAACAAGTTGACCAAAGGAAAACTCAAAGAAGCTGTTGCACACAGATATTTTAAGCAGCTAATCAATGCCGTAGATTATTGTCACAGTCGAGGCGTGTACCACCGAGACATAAAGCCCGAAAACATTCTATTGGATGAAAATGGGAATCTGAAGGTTTCTGATTTCGGGTTAAGTGCTCTCGCGGAAGCCAAGCAGCAAGATGGCTTGCTCCACACACCTTGTGGCACCCCTGCTTATGTTGCTCCTGAAGTCATCAAAAGGAAGGGATATGATGGTGCCAAAACTGATATTTGGTCTTGTGGAATAGTTCTCTTTGTCTTATTGGCGGGTTATCTTCCCTTTTACGACTCAAATTTGATACATATGTATAGGAAGATAAGCAAAGCAGAATTAAAATGCCCTAATTGGTTCCCACCAGAAGTATGCAGGCTACTCAGCGATATATTGGATCCAAATCCAGAAACTAGGATTTCCATTGCTAAGGTTAAGGAAAGTTATTGGTTCAAAAACGGACCAAAAGCTAAGAATAAAACACCTGTAGAGGAAAACAACACCGTCTCTTCTTCAGGTACCATTATTTCTGATCAAAGTGATGGAGTGGAAGCGAATGAAGAGCCGGTTGTGCCTGTAAGTATAAATGCCTTTGATATCATCTCCCTCTCTGCTGGTTTTGATCTCTCTAGATTCTTTGATGACAAGTTTCAAAAAAGAGAAGCAAGATTTAGCTCAAAGCTACCTGCATCGGTCATCATCTCTAAGCTGGAAGACATTGCGAAGCAGCTGAGTTTGAAAATAAAGAAAAAAGCTGCTGGTTTGTTGAGATTAGAGGACCTCAATGAAGGTAGGAAGGGGGTTTTATCCATTGATGCAGAGATCTTTGAAGTTACTCCTTTCTTCCATATGGTGGAAGTGAAAAAATCAAATGGAGATACATTGGAATTTCAGAAAATATTGAAGGAGGATATAAGGCCTGCTCTTCAGGATATTGTTTGGGTATGGCAAAGTGACCAACAACTGCAATCACAACAGTCAGAACAACAGTTACAAATACATGACCAACAGCAACAGCAACAGCAACCACAGTCATAA 1383 0.4035 MESKSNILMGRYELGRLLGQGTFGKVYYARSAITNQGVAIKMMDKDKVIKTGLADRIKCEISIMKLARHPNIIQLFEVMATKSKIYFVMEYAKGGELFNKLTKGKLKEAVAHRYFKQLINAVDYCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALAEAKQQDGLLHTPCGTPAYVAPEVIKRKGYDGAKTDIWSCGIVLFVLLAGYLPFYDSNLIHMYRKISKAELKCPNWFPPEVCRLLSDILDPNPETRISIAKVKESYWFKNGPKAKNKTPVEENNTVSSSGTIISDQSDGVEANEEPVVPVSINAFDIISLSAGFDLSRFFDDKFQKREARFSSKLPASVIISKLEDIAKQLSLKIKKKAAGLLRLEDLNEGRKGVLSIDAEIFEVTPFFHMVEVKKSNGDTLEFQKILKEDIRPALQDIVWVWQSDQQLQSQQSEQQLQIHDQQQQQQQPQS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0991 460 Gene3D Transferase(Phosphotransferase) domain 1 3 309 - -
Lja6g0991 460 PANTHER - 2 448 - -
Lja6g0991 460 Gene3D Kinase associated domain 1, KA1 310 430 - -
Lja6g0991 460 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0991 460 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Lja6g0991 460 CDD CIPK_C 311 425 - -
Lja6g0991 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lja6g0991 460 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0991 460 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0991 460 Pfam NAF domain 307 365 IPR004041 GO:0007165
Lja6g0991 460 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Lja6g0991 460 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 448 - -
Lja6g0991 460 SUPERFAMILY Protein kinase-like (PK-like) 8 308 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0991 Lja-Chr6 22122450 22125025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0991 1 435 CBL-interacting serine-threonine protein kinases AT5G58380 64.823 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja6g0991 Pkinase 2.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0991 - - gmx:100790905 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0991 6 22122450 22125025 Lja6g0991 6 22122450 22125025 ECH
Lja6g0991 6 22122450 22125025 Lja1g3278 1 40595047 40598731 ECH
Lja6g0991 6 22122450 22125025 Lja6g0317 6 7931590 7933826 ECH
Lja1g3278 1 40595047 40598731 Lja6g0991 6 22122450 22125025 ECH