Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0984 ATGCCGGAGATCGAACAACAACCGCCGGAGGCAACCGCACTGTTCGGCAAATACGAGCTGGGAAGGGTCCTAGGCTGCGGCGCGTTCGCCAAGGTGCACTACGCGCGCAACGTGCAAACCGGTCAGAGCGTGGCGGTTAAGATCATCAACAAGAAGAAGCTCGCCGGAACCGGCCTCGCCAGCAACGTCAAGCGCGAGATCGCCATCATGAGCCGCCTCCACCACCCCCACATCGTGCGCCTCCATGAGGTTCTCGCCACGAAGACCAAGATCTACTTCATCATGGACTTCGTTCGCGGCGGCGAGCTTTTCGCCAAGGTTTCTAAGGGTCGGTTTGGGGAGGATCTCAGCCGTCGGTATTTCCACCAGCTGATCTCTGCCGTCGGGTACTGCCATACCCGCGGCGTGTTCCACCGTGATCTCAAGCCGGAGAATCTCCTCCTTGATGAAAATGGCGATTTGAAGGTTTCGGATTTCGGGTTGAGCGCTTTGAGAGATCAGATCCGACCCGACGGGTTGCTGCATACGCTTTGCGGAACTCCGGCGTACGTGGCGCCGGAGATTCTCGCGAAGAGGGGCTACGATGGCACGAAGGTGGATGTTTGGTCATGCGGCGTCGTTTTGTTTGTTCTTGCAGCTGGGTATCTTCCGTTCAATGATCCGAATTTGATGGTGATGTACCGGAAGATTTACAACGGTGAATTCCGGTGCCCGCGGTGGATGTCGCCGGATCTGCGGCGGTTTCTGTCGCGGTTGCTTGACACCAACCCGGAGACCCGGATCACCGTCGATGGGATGACCCGGGACCCGTGGTTCAAGAAGGGATACAAGGAGATAAAGTTCCATGAGGAGTATCGACCCGAATCTGGATCCGGATCTGGGTCGGAGGTGGTGGACTTGAACGCGTTTGATATCATAACGTTTTCATCGGGTCTTGATCTTTCGAGATTGTTCCGGCAAAAGGAAGGGGAGGAGAGGCTGGTGGTGAGTGGGACGCCGGAGAAGGTGCTGGAGATGGCGGAGGAGGTGGGAGCGGCGGAGGGGATGGCGGTGAGGTGGAAGAAGGAATGTGGGGTGGAGCTGGAAGGGCTGAATGGTGATTACGGGATTGGGATTGATGTTTCCCGGTTGACGGCGGAGCTGGCGGTGGTTGAGGTTAAGATGAGGGGTGTCGACGCCGTGGCATTCAGAAATCTCTGGGATGAAAAGCTCAAGCCTCAGCTGCTAGGTGGTGCAACGACGTCGTATCATCAGGAAGTGGAGCCGGAGTCACCGGAGTCGCAGGTTGCCAGTGATTAG 1299 0.5735 MPEIEQQPPEATALFGKYELGRVLGCGAFAKVHYARNVQTGQSVAVKIINKKKLAGTGLASNVKREIAIMSRLHHPHIVRLHEVLATKTKIYFIMDFVRGGELFAKVSKGRFGEDLSRRYFHQLISAVGYCHTRGVFHRDLKPENLLLDENGDLKVSDFGLSALRDQIRPDGLLHTLCGTPAYVAPEILAKRGYDGTKVDVWSCGVVLFVLAAGYLPFNDPNLMVMYRKIYNGEFRCPRWMSPDLRRFLSRLLDTNPETRITVDGMTRDPWFKKGYKEIKFHEEYRPESGSGSGSEVVDLNAFDIITFSSGLDLSRLFRQKEGEERLVVSGTPEKVLEMAEEVGAAEGMAVRWKKECGVELEGLNGDYGIGIDVSRLTAELAVVEVKMRGVDAVAFRNLWDEKLKPQLLGGATTSYHQEVEPESPESQVASD* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0984 432 Pfam NAF domain 300 352 IPR004041 GO:0007165
Lja6g0984 432 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 423 - -
Lja6g0984 432 PANTHER - 1 423 - -
Lja6g0984 432 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0984 432 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0984 432 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Lja6g0984 432 CDD CIPK_C 301 408 - -
Lja6g0984 432 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Lja6g0984 432 Gene3D Kinase associated domain 1, KA1 301 410 - -
Lja6g0984 432 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0984 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Lja6g0984 432 SUPERFAMILY Protein kinase-like (PK-like) 15 296 IPR011009 -
Lja6g0984 432 Gene3D Transferase(Phosphotransferase) domain 1 10 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0984 Lja-Chr6 21903721 21905613 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0984 1 409 CBL-interacting serine-threonine protein kinases AT2G30360 64.218 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja6g0984 Pkinase 1.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0984 - K12761 gmx:100799169 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0984 6 21903721 21905613 Lja6g0984 6 21903721 21905613 ECH