Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0982 ATGTTTTACAATCAAAAGGGTAACGAGGATGCCAAAGGTGAGTCTCGTTACATGGAAACCGACCCAACTGGTCGCTATGTCCGGGTTGGAGATGTTCTTGGAAAAGGGGCAATGAAAACAGTGTACAAAGCAATTGATGAGGTTCTTGGAATGGAGGTAGCATGGAACCAGGTGAGACTCAATGAAGCACTTCGTACACCAGAGGACTTGGAGAGGCTTTATTTAGAGGTTCATCTTCTCAGCACCCTCAAGCACCAATCCATCATTAGATTCTATACCTCATGGATCGATGTTGACAACAAGACCTTCAACTTCATCACAGAAATGTTCACTTCTGGGACACTCAGAGAATACAAGAAGAAATACAATCACGTAGGCATACAAGCAATAAAGAGTTGGGCATGCCAAATCTTAGAGGGTCTTGTTTATCTGCATGAACATGATCCTCCAGTAATTCACAGGGACCTCAAATGTGATAACATATTTGTGAATGGCCATCTTGGACAAGTGAAGATTGGTGACCTGGGTCTAGCGGCGATTCTCCGTGGTTCCCAGCCAGCCCACAGTGTTATAGGCACCCCTGAGTTCATGGCACCAGAGTTGTATGAAGAAGAATATAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTTCTTGAAATGCTTACATCAGACTATCCATATAGTGAATGTGCTAATCCTGCACAGATATACAAGAAAGTGACATCGGGGAAGCTACCCAAAGCAATTTTCCGGATTGAAGACATGGAAGCGCAAAGGTTTATTATCAAATGCCTGGTACCTGCTTCAAAGAGACCGTCCGCAAAAGAATTGTTGCATGATCCGTTTCTTGTGTCTGATGATGCATCATCCACACCTAAGATTGGAATGCAGAATCCATTTTTGAACTACAATGAGATGGATAAACTTCAATTGAGTGATGGTTCATCAAGGACTGCAATGTCAATAACTGGGAAGCTGAATCCTGAAGATGATACTATCTTTCTCAAAGTGCAAATTTCTGACACGGATGGTTCTGCTAGGAATGTATATTTTCCCTTTGATATCTTCACTGACACCCCCACTGATGTTGCAACGGAGATGGTGAAAGAATTGGAGATCGCGGATTGGGAGCCTTCTGAAATTGCTAGTATGATTGAAGGAGAGATATCTTTGCTGCTTCCAAATAGGAGGAATAGTAACTGTTCACACATCTGCCATACATTTAGTTATCCAGATGATGATGATGATGAAGGTCCTCATCATCGTTTCAACTCTGCCTCTTGTTCTTCATCCCAAGAATCAATATCTGGTTTAGCTATCAGAGCTGATGAGATATCAAATGAACATTGCTGGCTTCATGATGATATGCATGATGATGCTAGTTCACAATGCTCTTCACATGGAACATATTCCAACTTGAACTTTTGTTCTATGGACGACCAGGAGCACAATGTGGCTTCTACAAGAAAAGAAAAACATCCAATCATAAAGAGTCACAAGTTTACAAGGTTTTCACCTGGTGAAGACTTCATCACTTTGAACCAGTGCAAAGTTCTAGCAGGACTACAATCACCTTCTTCAAGTAAAAGTAAGAGGGTGATAGATAATCGTAGATTGACAAGGAACAAGTCACTGATTGATATACGGAGCCAATTACTTCACCGGTCACTAGTCGAGGAGGTAAACAAAAGACGGTTATTCAAGACAGTTGGAGCAGTTGAAGAGATTGGATTTCAGACACCTTATGAGGTTACCAGCAAAATGTCACAGCCAGTGTATAGTGCTTTGGATGTGAACCCTTCAAGGAGTGGCAAGGGAGAAAACTTGTAA 1836 0.4172 MFYNQKGNEDAKGESRYMETDPTGRYVRVGDVLGKGAMKTVYKAIDEVLGMEVAWNQVRLNEALRTPEDLERLYLEVHLLSTLKHQSIIRFYTSWIDVDNKTFNFITEMFTSGTLREYKKKYNHVGIQAIKSWACQILEGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECANPAQIYKKVTSGKLPKAIFRIEDMEAQRFIIKCLVPASKRPSAKELLHDPFLVSDDASSTPKIGMQNPFLNYNEMDKLQLSDGSSRTAMSITGKLNPEDDTIFLKVQISDTDGSARNVYFPFDIFTDTPTDVATEMVKELEIADWEPSEIASMIEGEISLLLPNRRNSNCSHICHTFSYPDDDDDEGPHHRFNSASCSSSQESISGLAIRADEISNEHCWLHDDMHDDASSQCSSHGTYSNLNFCSMDDQEHNVASTRKEKHPIIKSHKFTRFSPGEDFITLNQCKVLAGLQSPSSSKSKRVIDNRRLTRNKSLIDIRSQLLHRSLVEEVNKRRLFKTVGAVEEIGFQTPYEVTSKMSQPVYSALDVNPSRSGKGENL* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0982 611 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0982 611 Gene3D - 327 402 - -
Lja6g0982 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Lja6g0982 611 SUPERFAMILY Protein kinase-like (PK-like) 28 311 IPR011009 -
Lja6g0982 611 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Lja6g0982 611 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 23 593 - -
Lja6g0982 611 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0982 611 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Lja6g0982 611 CDD STKc_WNK 25 285 - -
Lja6g0982 611 PANTHER WNK KINASE 23 593 - -
Lja6g0982 611 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0982 Lja-Chr6 21886153 21890956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0982 15 589 MAP Kinase Kinase Kinase AT5G58350 59.450 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lja6g0982 Pkinase 1.8e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0982 6 21886153 21890956 Lja6g0982 6 21886153 21890956 ECH