Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0968 ATGCCACCTGGTTTGGAATACAATATCAGTGAGTTGTATGAAGAAGCTAAGAAAAGATGGCTCAAGCCTGTTGAAGTGCTTTACATTTTGAGGAATCACAACGAGTGTGAATTCACCAACGTGCCCCCTCATCAGTCAACAGGTGGATCCCTGTTTCTATTTAACAGAAGAGTCCTACGTTTCTTCCGTAAAGATGGTCATAATTGGCGGAAGAAAAGAGATGGCAAAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGAAATGTTGAAATCCTGAACTGTTACTATGCACATGGAGAGGAGAACCGTACTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGAATATGAGCATATAGTACTCGTGCATTACAGAGATATAAATGAGGCCAAACCTAATTCTGGACCTGCCAGACAATCGTCACCAGGTTCCTCTTCTGTGTTTAGTCAGACTGGTAGCTCTTATACTACTCAGAACCCAGGGACAGCATCAATGCTTGGTGATGATTCATGTGAACCTAAACTGAATTTCTCCAGCCTTGGGTCTTTGGATGTTACCTCTGATATGGTTACCGGGAACATTATAATGAGTCACCTGGATGAAACAGATGCAAAAGTTTTGCGCCAGTTGGAAGAACAGTTAAGTCTGAATGAGGACAGCTTCAAGGAATTTTCTCCCTTGTACAGTAAGGATGAAGTTCCACATGACCTAACACCTTGCCAAGATCAAATATTGGTTTACAAAGAAGATATCTCTTCAGCATTCTCGAGACCAGATGACCATAAAGAACATTATGATGGTTATAATGGAAGACAAGATGACAGTCGTAATGATTACCATGCATTACTTGATCATGATTGCCCTGATGGACATGAAAAGTCATTATCTTGGACGGAGATGCTGGAATCGTGCAAGCCTTCATCCGTTATCAAGTTACCAGAGCAACATCCATACGAGGCATTTGAAAATGAAAAGTTACTATCTTCTTCACGAAGGGAAATTATTGCCAACCAGGAAAGCAGCCACTGGCTAATCTCCAACAGTAATAATGCTGAGAAGAATTTTGCCTTCTCATTTCCTCAAGACATTGGTGGAGTCACAAGTCCTCTATATTCTTTGGAAGAAACTCAAGGAACTAATTCTGACTACTACACAACATTTTTTGATCAAATCCAAATTCAAGAACCTCTGGGTACAGATTCAAGCTTGATTGTTTCAGAGAAACAGAAATTTACAATTAGGGAAGTCTCCCCAGAATATTGTTATGCCACTGAGACTACAAAGGTGATCATTATTGGGTCATTTCTCCTCCCTTCCTCGGATTCTAGGTGGGGTTGTATGTTTGGTGATATTGAAGTTCCTGTTGAGATAATTCAGGATGGCGTAATCAGTTGTGAAACTCCGCCCCATCCTCTCGGAAAGGTCACTCTGTGCATTACTTCAGGAAATAGGGAGCCATGCAGTGAAGTCAGAGAGTTTGAGTTTCGCAATAGGACCAATAGTTGTGCTCGCTGTGATTCATTGGAAACAGTGGCCACTAGAAGTCCAGAAGAGCTGTTATTACTTGTTCGATTTGCACAGATGCTCCTTTCTCCTACGACAGCAAAGCATGACATTATAGAATCTGGAAGTCACCTTCCAACCAAACAAGAAGCAGATGATGATTCATGGAGCCATATTATAGACACTCTCCTTGTTGGCAGCGGAACTTCATCTGGTACTATTGATTGGCTTCTTGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTTTCCTACAGATCCCATGAAAGAGATGAAGGGACAGGTTGTTTTTTGTCCAAGAAAGAGCAGGGGATTATTCACATGGTTTCTGGGTTGGGCTTCGAGTGGGCCTTGAGCCCCATTCTCAGCTGTGGTGTGAATGTAAATTTCCGTGACATCAATGGGTGGACCGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAGGTGGTTGCTTCACTTATAGCTTCCGGCGCATCTGCTGGAGCAGTGACAGATCCGAATTCACAAGATCCAACTGGTAAAACTGCTGCCTCTATTGCGGCCTGCAATGGACATAAGGGACTTGCTGGGTATCTTTCAGAGGTTGATCTAACAAGCCATCTGTCATCCCTCACATTGGAAGAGAGGGATATTGCTAAAGGTTTTTCTGAGTTTGCAGCTGAGTTAACAAGCCATCTGTCTAAGGAAAATCTTGAAGTCAGTGAAGATCAGGTTTCAGTAGCAAATACCTTGGATGCTGTCAGAAATGCAGCTCTGGCAGCTGCTCGAATACAGGCTGCTTTTCGTGCACATTCCTTCCGGAAACGGAAAGAGAGAGAAGTTGTGGCCGCTATGGCTTCTTCCAGTCTAGATGGATATGGTATCAGTGCAGGTGGCATTGACGATAACATTCCAGCACTTGCTGCCTTGTCAAAATTTGGCATTCGAAGCTTACGTGATTATGCTGCCTTATCAATTCAGAAGAAATACCGAGGCTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAAAAAGTAGTAAAGATACAGGCTCATGTGAGGGGTTACCAGGTTCGGAAGCAATACAAGATAATAATATGGGCCGTTGGAATTTTGGACAAAGTTGTGCTACGGTGGCGGAGAAAACGAGTTGGTTTACGAAGTTCTCAAAAAGAAACGGAGACAAATGAAGAAAGTGATGATGAAGATTTTCTGAAGGTGTTCCGAAAAGAGAAAGTAAATGTAGCAGTTGAAAAGGCTTTGAAACGGGTGCTTTCCATGGTCCATTCTACCCGTGCTCGTCAGCAATATAGTCGCCTCCTTGAGATGTATCGGCAAGCCAAGGCTGAACTTGGCAGCACGAGTGATGAAACACTGCTATCAACAACATCTGTAGAGGATGCTTTCAATATTGAAGATGATGATTTGTTTCAATTCCCCTGGGAAGCGCTCTAG 2967 0.4348 MPPGLEYNISELYEEAKKRWLKPVEVLYILRNHNECEFTNVPPHQSTGGSLFLFNRRVLRFFRKDGHNWRKKRDGKTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWMLDPEYEHIVLVHYRDINEAKPNSGPARQSSPGSSSVFSQTGSSYTTQNPGTASMLGDDSCEPKLNFSSLGSLDVTSDMVTGNIIMSHLDETDAKVLRQLEEQLSLNEDSFKEFSPLYSKDEVPHDLTPCQDQILVYKEDISSAFSRPDDHKEHYDGYNGRQDDSRNDYHALLDHDCPDGHEKSLSWTEMLESCKPSSVIKLPEQHPYEAFENEKLLSSSRREIIANQESSHWLISNSNNAEKNFAFSFPQDIGGVTSPLYSLEETQGTNSDYYTTFFDQIQIQEPLGTDSSLIVSEKQKFTIREVSPEYCYATETTKVIIIGSFLLPSSDSRWGCMFGDIEVPVEIIQDGVISCETPPHPLGKVTLCITSGNREPCSEVREFEFRNRTNSCARCDSLETVATRSPEELLLLVRFAQMLLSPTTAKHDIIESGSHLPTKQEADDDSWSHIIDTLLVGSGTSSGTIDWLLEELLKDKLQLWLSYRSHERDEGTGCFLSKKEQGIIHMVSGLGFEWALSPILSCGVNVNFRDINGWTALHWAARFGREKVVASLIASGASAGAVTDPNSQDPTGKTAASIAACNGHKGLAGYLSEVDLTSHLSSLTLEERDIAKGFSEFAAELTSHLSKENLEVSEDQVSVANTLDAVRNAALAAARIQAAFRAHSFRKRKEREVVAAMASSSLDGYGISAGGIDDNIPALAALSKFGIRSLRDYAALSIQKKYRGWKGRKEFLALRQKVVKIQAHVRGYQVRKQYKIIIWAVGILDKVVLRWRRKRVGLRSSQKETETNEESDDEDFLKVFRKEKVNVAVEKALKRVLSMVHSTRARQQYSRLLEMYRQAKAELGSTSDETLLSTTSVEDAFNIEDDDLFQFPWEAL* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0968 988 Coils Coil 934 954 - -
Lja6g0968 988 Gene3D Immunoglobulins 408 503 IPR013783 -
Lja6g0968 988 ProSiteProfiles Ankyrin repeat region circular profile. 644 670 - -
Lja6g0968 988 ProSiteProfiles Ankyrin repeat profile. 644 676 IPR002110 GO:0005515
Lja6g0968 988 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Lja6g0968 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 874 IPR027417 -
Lja6g0968 988 Pfam Ankyrin repeats (3 copies) 632 704 IPR002110 GO:0005515
Lja6g0968 988 SMART iq_5 822 844 IPR000048 GO:0005515
Lja6g0968 988 SMART iq_5 845 867 IPR000048 GO:0005515
Lja6g0968 988 SMART iq_5 760 782 IPR000048 GO:0005515
Lja6g0968 988 SMART ANK_2a 683 712 IPR002110 GO:0005515
Lja6g0968 988 SMART ANK_2a 644 673 IPR002110 GO:0005515
Lja6g0968 988 CDD IPT 414 498 - -
Lja6g0968 988 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 983 - -
Lja6g0968 988 Pfam IPT/TIG domain 414 485 IPR002909 -
Lja6g0968 988 ProSiteProfiles IQ motif profile. 823 852 IPR000048 GO:0005515
Lja6g0968 988 MobiDBLite consensus disorder prediction 132 170 - -
Lja6g0968 988 ProSiteProfiles IQ motif profile. 846 870 IPR000048 GO:0005515
Lja6g0968 988 SMART CG_1_2 12 130 IPR005559 GO:0003677
Lja6g0968 988 SUPERFAMILY Ankyrin repeat 615 706 IPR036770 -
Lja6g0968 988 SUPERFAMILY E set domains 414 498 IPR014756 -
Lja6g0968 988 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Lja6g0968 988 Gene3D - 824 869 - -
Lja6g0968 988 ProSiteProfiles IQ motif profile. 764 790 IPR000048 GO:0005515
Lja6g0968 988 PANTHER CALMODULIN-BINDING PROTEIN 1 983 - -
Lja6g0968 988 MobiDBLite consensus disorder prediction 260 279 - -
Lja6g0968 988 Pfam IQ calmodulin-binding motif 848 867 IPR000048 GO:0005515
Lja6g0968 988 Pfam IQ calmodulin-binding motif 826 843 IPR000048 GO:0005515
Lja6g0968 988 MobiDBLite consensus disorder prediction 135 167 - -
Lja6g0968 988 Gene3D - 602 706 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0968 Lja-Chr6 21495040 21515226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0968 5 984 CAMTA Transcription Factor Family AT1G67310 49.461 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lja6g0968 CG-1 1.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0968 K21596 - gmx:100791430 1309.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0968 6 21495040 21515226 Lja4g1036 4 8834026 8842669 PCT