Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0965 ATGGACTGGAATGTGAAATCTCTCGGGCAATGGGATTGGGAGCATTTCTTCTTGAATTCAAAAGCAACAGAAAATCCCACGTCCCAACCCACTGATTGGAGTAGTGAAGCCGATCGAGAAATAAATGTCGGGGTGTTGTATCCATCAGGCAGTAGTGGTGGTTATTCTGGGTCTGAACTAATACATGCCGCTACTTCCTCAAGGAGTTCAAAATCACCTTCCAACATTTCATCATCAAATGGGGATAGCAAGACATCTATGTTAACTCTTGAAGGTTCTCCAGATGATTCCATTGGTAAGAAAGAATTGACCAAAGGAGAGCCAGTTGACACTTCTACAGAAGCAGAGCCCTCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAAAGATTGTATTTTGAGGATGTTTGTGCAGGAATTGATTCCAAAAAGTCACCTGCTTCTGGGGTTACCATTTCATCTGGAAAGAGATGTAAATCCAGTAATCAGAACTTACAACACACAAGCTGCCAGGTAGAAGGCTGTGGCCTTGATCTCTCATCTGCTAAAGAATACCATCGCAAGCATAGAGTTTGTGATAGTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGATTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCCGAGTTTGATGATAACAAAAGAAGCTGCAGACGGCGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAGTCCAATTAAATCCATCAGCTTTGTCTTCATCGACCTATGGTATAAATCACAAGGATGGTAGGAAAATAATGAGCCCATTTGCATTTTCAAGGACTGCTACAAATTTAGCATGGCAAGACATGCACAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTTTTGAAGACTGCAAAAGCCTTCAATAAGACATCAAGTATTTCTCCTATGCTTTCTGCTGATTCCAGTCGCCTTCTTACATCCAAAGGCATAGGAACCAAGATTATTGTTCCAGGTATAGAAGATTCCACTACCTCATCTACACAAGAAGTTAACCGTGCTCTCTCTCTTCTGTCAATCAATTCATGGGGTGCATATGAGACTAAATCCCTGTCCCTAGAGCATTCCAATCAGTCCATAGCAAATGCAATGACTCTTCCTTCATCAGAATATTGGCCCTCTGATCAACTCTCATACTCGGATTGTGACAATAGCAATCGCTTTCAAGACTTTCAGCTGTTGAGCGCGCCCTTTGAGTCAGGTTTTCCTTGCAACCAGCTGGATTAA 1296 0.4321 MDWNVKSLGQWDWEHFFLNSKATENPTSQPTDWSSEADREINVGVLYPSGSSGGYSGSELIHAATSSRSSKSPSNISSSNGDSKTSMLTLEGSPDDSIGKKELTKGEPVDTSTEAEPSSVSGEPLLTLKLGKRLYFEDVCAGIDSKKSPASGVTISSGKRCKSSNQNLQHTSCQVEGCGLDLSSAKEYHRKHRVCDSHSKSPKVVIAGLERRFCQQCSRFHALSEFDDNKRSCRRRLSDHNARRRKPQPEAVQLNPSALSSSTYGINHKDGRKIMSPFAFSRTATNLAWQDMHSSKLPQTKDFLLKTAKAFNKTSSISPMLSADSSRLLTSKGIGTKIIVPGIEDSTTSSTQEVNRALSLLSINSWGAYETKSLSLEHSNQSIANAMTLPSSEYWPSDQLSYSDCDNSNRFQDFQLLSAPFESGFPCNQLD* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0965 431 Pfam SBP domain 173 246 IPR004333 GO:0003677
Lja6g0965 431 MobiDBLite consensus disorder prediction 95 109 - -
Lja6g0965 431 Gene3D - 163 234 IPR036893 GO:0003677|GO:0005634
Lja6g0965 431 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 430 IPR044817 GO:0003677
Lja6g0965 431 SUPERFAMILY SBT domain 172 252 IPR036893 GO:0003677|GO:0005634
Lja6g0965 431 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Lja6g0965 431 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 430 - -
Lja6g0965 431 MobiDBLite consensus disorder prediction 49 92 - -
Lja6g0965 431 MobiDBLite consensus disorder prediction 44 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0965 Lja-Chr6 21474761 21479672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0965 1 365 SBP-box Gene Family AT1G27360 39.378 1.05e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja6g0965 SBP 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0965 - - gmx:100781289 594.349