Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0963 ATGGCAATGGATTCAGGCTCAGCGGAGGAAGAGAAGGCACGATCACCCGAATTACCGAGAGTTAGGGTGAAGAAGATAATGACTGTGGACAAAGAGGTACAGAGAGTGAGTTCAGAAGCGTTGTTCCTGGTGTCCCTCTCCACCCAGCTATTCCTCGAATTTCTTGCTGAAAACTCTGCCAAGATCGCCATCGACAAGAAACGCAAGACCGTCAACCTCGAGCACTTAAGAATCGCTGTTAAGAGGCATCGCCCAACCTCTGATTTTCTTCTTGATTCGCTTCCAATGCCATTGCCTGCTCACAAGCCTGATAAGCCCACTGCGGATAAGCCCGATACGGCCGCGGCAGCCGGTGTTGGTAGTACTCGCCGCATCGATCATTTCTTTCGAAAATCAGATGCTTGA 405 0.5037 MAMDSGSAEEEKARSPELPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKRKTVNLEHLRIAVKRHRPTSDFLLDSLPMPLPAHKPDKPTADKPDTAAAAGVGSTRRIDHFFRKSDA* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0963 134 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 132 - -
Lja6g0963 134 Gene3D Histone, subunit A 1 96 IPR009072 GO:0046982
Lja6g0963 134 SUPERFAMILY Histone-fold 18 93 IPR009072 GO:0046982
Lja6g0963 134 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 8 132 - -
Lja6g0963 134 MobiDBLite consensus disorder prediction 95 119 - -
Lja6g0963 134 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 17 80 IPR003958 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0963 9 134 CCAAT-HAP5 Transcription Factor Family AT5G43250 57.937 1.40e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lja6g0963 CBFD_NFYB_HMF 4.4e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0963 - - lja:Lj3g3v0201890.1 247.284