Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0960 ATGCGAATGATGGATGTTGCTGAGGTTGAAGAAACCCTTTTTGCAGCAAGTGATGCCAAGCTACATGTAGAAATGTGCAGGCGTCTTTCTGCAATATATTGCAAAATATTGTCAATATTTCCTACTTTAGAAGCAGCTAGGCCGAGGAGCAAATCCGGAATCCAGGCATTATGTTCATTGCATGTAGCGTTGGAGAAGGGAAAGAATGTTCTTCAGCACTGCTCAGAGTCTAGCAAACTTTACTTGGCTATAACTGGGGATTCTGTACTTCTGAAATTTGAGAAGGCTAAGTGTGCTCTTGAAGATAGTCTTAAACAGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGATTGATGAAATTGTGAATGAACTTACTGGTTTGGAATTTGCACTTGACCCATTGGAGAAGCTTGTTGGGGATGATTTAATTGCATTGCTTCAACAGGAGAGAAAGTTTAACAACTCAAATGAGAGTAGTGAACTTGAATGTTTTCATCTTTCTGCTACAAGACTTGGAATCACCTCTTCAAGAGTGGCTCTTTCTGAAAGAAGAGCTCTCAAAAAACTCATAGAAAGGGCTCGGGCTGAGGATGACAAGCGGAAGGAGTCAATTATTGCATATCTTTTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTTTCTGATGATAATGATTCTCAGGGTTCCCAACCTTGTTCTCCTACTGTTCAGAAATCTCTCGAGTACGGTGCTAATGGGGGTCCTTGTCAGGCCTTTGACAGACAGCTTTCAAAACTTAATTCCTTTAATTTAAAGCCTAATAATAGGAAATCTGGGCAGATGCTCCTTCCCCCCGAAGAGTTAAGGTGTCCAATATCTCTGCAGCTTATGAGTGATCCTGTCATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAAAAGTGGTTCAGTGATGGGCACAACACCTGTCCAAAGACTCGGCAGAAACTTTCACATCTTTATTTGACTCCTAATTACTGTGTTAAGGGCCTTGTGGCAAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGTCCTCCGGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCGGATTCTGAGTCCATGAATACAAGATCTGTAAACAGTGTCAACTCTTGCAAAATGAAGTGTGTCAAAGTTGTTCCTCTAGAAGATAGCGGTGTCTCAGTGCAAACTGAGGGAGATGCAACCGAAAGTTTGTCTGCACAAGAGGAAGAATATGAGCAGTATTTTAGTTTTCTGAAAGTATTGACTGAAGGGAATAATTGGAAGAGGAAGTGTAAAGTGGTAGAACAGTTAAGGCTGTTGCTGCGGGATGATGAAGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTATGCAGTTTTTGCTATCAGCTGTGCGTGAAGGGTGTTCGATGGCTCAGGAAAGTGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATCATGATATCTGTGGGAATCCTATCATTGTTGGAGGAAATGATTTTGAAACCTCACTCATACGGTTGTGCAGCCGCCCTGTATCTGAATCTTACTTGCCATGAAGAAGCCAAGCAAATAGTCGGAACGAGTCAGGCTGTCCAATTCCTAATCCATATTCTTCAATCCAATACTGAAGTCCAGTGCAAGCTAGATTCCCTCCATGCACTCTATAATCTTTCTACTGTGTCCTCTAATATTTCATACCTCCTTTCATCAGGCATCATGAATGGTCTACAGTCCCTTCTTGTAGGCCAGGATGACTCCATGTGGACAGAAAAGTGCATTGCTGTTTTGATAAACTTGGCTGTTTCTCAAGTTGGAAGAGAAGAAATTATGTGTACTCCGGGACTCATAGGCGCACTGGCTTCGATACTGGATACTGGTGAACTCCTAGAGCAGGAGCAAGCTGTTTATTGTCTCCTAATTTTGTGTAACAGGAATGAGAAATGTTGTGAGATGGTCCTTCAAGAAGGAGTTATACCTGCGCTGGTCTCGATATCAGTGAATGGGACGTCAAGAGGGAGAGAAAAAGCTCAGAAGCTCTTGATGCTCTTCAGAGAGCAGCGACAACGAGACCATTCACCTGCTAAGGCGGCACATCAATGCAAACCTGAAACTAGTGATTTGTCCATGCCTCCTCCTGAAGAGAAACCTCTATGTAAGTCAATGTCTAGAAGAAGGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTCTACCAGTGTTAA 2307 0.4218 MRMMDVAEVEETLFAASDAKLHVEMCRRLSAIYCKILSIFPTLEAARPRSKSGIQALCSLHVALEKGKNVLQHCSESSKLYLAITGDSVLLKFEKAKCALEDSLKQVEDIVPQSIGCQIDEIVNELTGLEFALDPLEKLVGDDLIALLQQERKFNNSNESSELECFHLSATRLGITSSRVALSERRALKKLIERARAEDDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQKSLEYGANGGPCQAFDRQLSKLNSFNLKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFSDGHNTCPKTRQKLSHLYLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDSESMNTRSVNSVNSCKMKCVKVVPLEDSGVSVQTEGDATESLSAQEEEYEQYFSFLKVLTEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALMQFLLSAVREGCSMAQESGAMALFNLAVNNNRNKEIMISVGILSLLEEMILKPHSYGCAAALYLNLTCHEEAKQIVGTSQAVQFLIHILQSNTEVQCKLDSLHALYNLSTVSSNISYLLSSGIMNGLQSLLVGQDDSMWTEKCIAVLINLAVSQVGREEIMCTPGLIGALASILDTGELLEQEQAVYCLLILCNRNEKCCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMLFREQRQRDHSPAKAAHQCKPETSDLSMPPPEEKPLCKSMSRRRVGKAFSFLWKSKSYSVYQC* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0960 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Lja6g0960 768 CDD RING-Ubox_PUB 286 328 IPR045210 -
Lja6g0960 768 MobiDBLite consensus disorder prediction 711 742 - -
Lja6g0960 768 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Lja6g0960 768 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 751 - -
Lja6g0960 768 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Lja6g0960 768 Gene3D - 401 722 IPR011989 -
Lja6g0960 768 SUPERFAMILY RING/U-box 279 357 - -
Lja6g0960 768 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Lja6g0960 768 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Lja6g0960 768 PANTHER U BOX DOMAIN-CONTAINING 4 751 - -
Lja6g0960 768 SUPERFAMILY ARM repeat 432 705 IPR016024 -
Lja6g0960 768 SMART arm_5 542 583 IPR000225 GO:0005515
Lja6g0960 768 SMART arm_5 457 501 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0960 Lja-Chr6 21436321 21439820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0960 4 767 U-box Gene Family AT1G24330 64.056 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0960 - - gmx:100804344 1252.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0960 6 21436321 21439820 Lja4g1060 4 9122397 9126814 PCT