Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0954 ATGAATGAGGAAATCAAGTCAGAATTCAGAAAAAGCAGGTTCCATCTCAACAAAGAAGAAGAAGAAGAATTACTGAGCAAATGTGTCACTTTCTGTATCAACTACAGTCTCAGCCCTTCCGATCTCGTCTCAAGCTGGGAGGTTTACTGCCTCAATAGGCAGCTGAACGAACCAACTGTGCAAAATGTTGAAATGGACGGTTTTCTGATGCATCTACAAAATAATATGAAAGAAGATGTTTTAATGGAGGAAGCTGCATGGCATAGTTACTCTATCAAAGATGTAGAAATGATCTTAAATAATGATGATGATAAAAAGGACAATACTCCCGGAACGCCAACGGATCATCATCAAGATCTTCATTCACCTGCACATGATACGCCATCTTCAGTGTATGAAAATGTCTCATATTCTGGAAAACCATCAAATCTAGTGACACCCTTTTCAAAGCGAACAGATAGGTTTGCAGTGAAAGTTAGCATCAATACCATCCCTGATGTAGAGAATGGAAAACAAGAACTGAATCATGAGAACGCTGAGAATGACGAGGACAATGTTGTTAGGAAAGTTCTGCCCCGTGAAAGGTGTTCATTGGTGGTTCATGGATCAGGGCCCGAACCTGGTTGCAGGTTCATGTATGATCGGATTGAGGATAGGGTTAATGCAGTAGAAAATCGGATTAGGAAACATGCAAGAGCATTTGTAACTTCTAGGCTCTATGAAGAACTTGCAGATCCTACTATTGCTTCGCAGAGAAGCATTTTTGCTGTTGGCATGATATGTTGTGATGGAGAAGGCCGACTAAATGAGAAGTCAGTCATGCTGCAGAGCAGTATGGAGCACTCTGGAGGAGAATGTGTTCGCCTAGACTTACAACATTTAAGCCACTATTCAGTTTTTCCTGGCCAGGTAGTTGGTATTGGAGGGCATAATCCTAGTGGGCATTGCTTAGTTGCATCTAATTTGGAGGATTCTATACCTACTTCTGTTGCTGATGAGGATTTGAATCCTCCAAAGAAGCGAGCTATTGATAAGGAGAATCAGCCAACTGATCTGTTCTCTAAACCGAGAGCGTTATCAATGATTATTGCAGCGGGTCCTTTTACTACAACAGACAATTTGTTGTTTGAGCCTCTTGTAGAACTACTTGCATATGCAAAGCGAAAACCGACACAGTTGCTTGTATTGCTGGGACCATTTATTGATTCGGAACACCCAGACATTAAGAAAGGAACAACAGATCGGAGTTTTGATGAAATATTTCATTTTGAAATCTTGAGGAAGTTGCAAGATTATGTAGAATGTATGGGTTCAGCAGCACGTGTTCTCCTTGTTCCATCTATACGTGATGCTAACCATGATTTTGTTTTTCCTCAGCCTGCATTGGATATCAGTCTACCTGATCTCAAATCTCAGATAGTCAGTCTCGCTAACCCTGGACTCTTTGAAGCAAATGAGGTCAAAGTTGGTTGCTGCACTGTGGATATTCTCAAGCAGCTCAGTGGGGAGGAGATATCACGAATGGCAGCAGATGGAAAACCTGTTGATCGCTTGAGTAGACTTGCAAACCACATTCTTAACCAGCAAAGCTTTTATCCACTTTACCCGCCAGCAGAAAGTGTTCCCTTGGACTCTTCTCTTGCTCCAGAAGCCCTTCAACTCTCTTTGGTTCCAGATGTTCTTATCTTACCTTCAGATATAAAGTATTTTGTGAAGGTGCTGAGTAGCGAACGTGAAGGGATAGACCACGCGAAATGTGTCGCCGTCAACCCGGGAAGACTAGCCAAGGGAGAAGGAGGGGGTACTTTCGTAGAGCTCGATTACTGTGGAGGTCCTGATAAGATTAACGCTTCAGTTGTTGGCATATGA 1869 0.4238 MNEEIKSEFRKSRFHLNKEEEEELLSKCVTFCINYSLSPSDLVSSWEVYCLNRQLNEPTVQNVEMDGFLMHLQNNMKEDVLMEEAAWHSYSIKDVEMILNNDDDKKDNTPGTPTDHHQDLHSPAHDTPSSVYENVSYSGKPSNLVTPFSKRTDRFAVKVSINTIPDVENGKQELNHENAENDEDNVVRKVLPRERCSLVVHGSGPEPGCRFMYDRIEDRVNAVENRIRKHARAFVTSRLYEELADPTIASQRSIFAVGMICCDGEGRLNEKSVMLQSSMEHSGGECVRLDLQHLSHYSVFPGQVVGIGGHNPSGHCLVASNLEDSIPTSVADEDLNPPKKRAIDKENQPTDLFSKPRALSMIIAAGPFTTTDNLLFEPLVELLAYAKRKPTQLLVLLGPFIDSEHPDIKKGTTDRSFDEIFHFEILRKLQDYVECMGSAARVLLVPSIRDANHDFVFPQPALDISLPDLKSQIVSLANPGLFEANEVKVGCCTVDILKQLSGEEISRMAADGKPVDRLSRLANHILNQQSFYPLYPPAESVPLDSSLAPEALQLSLVPDVLILPSDIKYFVKVLSSEREGIDHAKCVAVNPGRLAKGEGGGTFVELDYCGGPDKINASVVGI* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0954 622 Gene3D - 512 618 - -
Lja6g0954 622 Gene3D - 342 510 - -
Lja6g0954 622 Pfam DNA polymerase alpha/epsilon subunit B 362 572 IPR007185 GO:0003677|GO:0006260
Lja6g0954 622 MobiDBLite consensus disorder prediction 101 123 - -
Lja6g0954 622 Coils Coil 213 233 - -
Lja6g0954 622 PIRSF DNA_pol_alpha_2 1 611 IPR016722 -
Lja6g0954 622 MobiDBLite consensus disorder prediction 101 132 - -
Lja6g0954 622 Gene3D - 1 65 IPR043034 -
Lja6g0954 622 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 620 IPR016722 -
Lja6g0954 622 Pfam DNA polymerase alpha subunit B N-terminal 23 248 IPR013627 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0954 Lja-Chr6 21314925 21320691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0954 2 622 Core DNA Replication Machinery Family AT1G67630 60.000 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0954 K02321 - gmx:100795306 957.207