LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g0933	ATGAAGAAAGTGAAACTTTCTTATATCTCTAATGTCACAGCAAGGAAAGCAACCTTTAAGAAAAGGAAGAAAGGTATCCTGAAGAAGGTGAAAGAACTCACCATTCTTTGCGGGATTCAAGCCTGTGTTATAGTTTTCAATCCTTTTAAATTTGAGGTAGAGGTTTGGCCGAATCCTGAGGGAGTTAGGCAGGTGATTAAGAAGTATCAAGATGCATCTGTAATAAATCAAACAAAGAATGTAAACAAAGAGAGCTTTATCATGCAAAGGATTACCAAAGCTCGTGAGCAATTGAAAAAGTTGCGTCAGGAGAATCGTGAGAAGGAGCTGACCATATATATGTTCAAATATATGAAAGAAAAAAACTTGCCAGACAACCTGAATGTTGAAGAAGTGAAAGAAATAAATGAGTTAATCGAGAAAAACAGTAAAGATATTGAAAAATAG	447	0.3512	MKKVKLSYISNVTARKATFKKRKKGILKKVKELTILCGIQACVIVFNPFKFEVEVWPNPEGVRQVIKKYQDASVINQTKNVNKESFIMQRITKAREQLKKLRQENREKELTIYMFKYMKEKNLPDNLNVEEVKEINELIEKNSKDIEK*	149

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g0933	148	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	8	48	IPR002100	GO:0003677\|GO:0046983
	Lja6g0933	148	Gene3D	-	12	122	IPR036879	GO:0003677\|GO:0046983
	Lja6g0933	148	PRINTS	MADS domain signature	36	57	IPR002100	GO:0003677\|GO:0046983
	Lja6g0933	148	PRINTS	MADS domain signature	21	36	IPR002100	GO:0003677\|GO:0046983
	Lja6g0933	148	PRINTS	MADS domain signature	1	21	IPR002100	GO:0003677\|GO:0046983
	Lja6g0933	148	Coils	Coil	84	111	-	-
	Lja6g0933	148	PANTHER	MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN	2	147	-	-
	Lja6g0933	148	PANTHER	MADS BOX PROTEIN	2	147	-	-
	Lja6g0933	148	SMART	madsneu2	1	58	IPR002100	GO:0003677\|GO:0046983
	Lja6g0933	148	ProSiteProfiles	MADS-box domain profile.	1	47	IPR002100	GO:0003677\|GO:0046983
	Lja6g0933	148	SUPERFAMILY	SRF-like	2	83	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g0933	Lja-Chr6	20599274	20599720	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g0933	2	141	Type I MADS-box Gene Family	AT1G65300	43.972	3.19e-36	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Lja6g0933		SRF-TF	1.4e-16	No_clan