Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0932 ATGAAGAAAGTGAAACTTTCTTATATCTCTAATGTCACAGCAAGGAAAGCAACCTTTAAGAAAAGGAAGAAAGGTATCCTGAAGAAGGTGAAAGAACTCACAATTCTTTGCGGGATTCAAGCCTGTGTTATAGTTTTCATTCCTTTTAAATCTGAGGTAGAGGTTTGGTCGAATCCAGAGGGAGTTAGGCAGGTGATTAAGAAGTATCAAGATGCATCTGTAATAAATCAAACAAAGAATGTAAACCAAGAGAGCTTTATCATGCAAAGGATTACCAAAGCTCGTGAGCAATTGAAAAAGTTGCGTCAGGAGAATCGTGAGAAGGAGCTGACCATAGATATGTTCAAATATATGAAAGAAAAAAACTTGCCAGACAACCTGAATGTTGAAGAAGTGAAAGAAATAAATGAGTTAATCGAGAAAAACAGTAAAGATATTGAAAAATAG 447 0.3535 MKKVKLSYISNVTARKATFKKRKKGILKKVKELTILCGIQACVIVFIPFKSEVEVWSNPEGVRQVIKKYQDASVINQTKNVNQESFIMQRITKAREQLKKLRQENREKELTIDMFKYMKEKNLPDNLNVEEVKEINELIEKNSKDIEK* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0932 148 PRINTS MADS domain signature 36 57 IPR002100 GO:0003677|GO:0046983
Lja6g0932 148 PRINTS MADS domain signature 21 36 IPR002100 GO:0003677|GO:0046983
Lja6g0932 148 PRINTS MADS domain signature 1 21 IPR002100 GO:0003677|GO:0046983
Lja6g0932 148 SMART madsneu2 1 58 IPR002100 GO:0003677|GO:0046983
Lja6g0932 148 Coils Coil 84 111 - -
Lja6g0932 148 PANTHER MADS BOX PROTEIN 2 147 - -
Lja6g0932 148 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Lja6g0932 148 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 8 48 IPR002100 GO:0003677|GO:0046983
Lja6g0932 148 Coils Coil 129 148 - -
Lja6g0932 148 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 147 - -
Lja6g0932 148 Gene3D - 12 123 IPR036879 GO:0003677|GO:0046983
Lja6g0932 148 ProSiteProfiles MADS-box domain profile. 1 46 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0932 Lja-Chr6 20595828 20596274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0932 2 141 Type I MADS-box Gene Family AT1G65300 44.681 1.37e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja6g0932 SRF-TF 5.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0932 - - gmx:100792290 183.341