Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0930 ATGGAAAACGGTTGCTTCCCTTCTCCTCCTCGACGTGATTTTCCTGCTGGTCTGCGAGTCCTTGTTGTCGATGATGATCCAACATGGCTCAAGATCCTTGAAAAGATGCTCAAAAAGTGCAACTATGATGTGACTACCTGTTGTTTAGCAAGACATGCTCTAAGCTTGCTTCGTGAAAGGAAGGACGGATATGACATAGTTATCAGTGATGTAAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGAGAAACAAGCAGGGTGATGAAAGGCGTTCAACATGGTGCATGTGATTATCTCCTCAAGCCTATACGGATGAAAGAACTGCGAAACATATGGCAACATGTCCTTAGAAAAAGGATACACGAGGCTAGAGAGTTTGAAAGTTTTGAGAGTTTTGAGGGCAATTACTTGATGAGGAATGGATCAGAGCTGTCTGATGATGGAAACCTGTTTGCACTAGAAGATATGACTTCATCGAAGAAAAGAAAAGATGCAGATAACAAGCATGACGACAAAGAATTTGTGGATCCATCTTCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTTGATCTTCATCAGAAGTTTGTTAGAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCAAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGACTAGAGAGAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGCAGGCTTCAGAAAGATGACGAACAAAAATCTTCCTCAAGTGGAATGAAGATTTCCGATTTACCTACAAAAGAAGTAGGAAGTTTCGGTCTTCATAACTCTGTAACAAAGCAGCAAAATGATGTTTCAATTGATAGCTGCAATTATCCAGATGGAGCATTACAGATTCAGAAAGTGGAAACCAAAAGTCAAGAAGGTAACACCAAGGGAATTGTTTCGCAGTCCACCATGGAAGAAAAGGGAAGAGCTTTGACTGGTAATAATAACATTACTGATGTAATGAGAGAGGGTTTACAGGTGGGCCTTAACCAACCTTTTGCCCTTCCTGAGTCAAAAGGAAACTGTACATCGTTTGATTGTGCCATCCCAACTAAGTACTCTTGGACTGAAGTTCCAGGAATGCAACTCAAAGAAGAACAGAAGTCAATTGTTCAGTTAGAGGATAGCTTCAACCAATTGCCGCCATTACTTGGAAAGCAGCATCATATCCAAGTTGATCAATCACAATCAATTGCTTCCATTAGTTCCACTCCCTCTATAATGAAGGAAGATGTTCCTGCTTGTATAGAAACAAAACCTGTGTTTTCTGATTACAAGAGCAGTTACACAAGTTCTATAAGTTCCAAAGTGAGTGCACTTGACACCTTTCCGATTCAGCCCGGAAGCCTTATGATGAGTGATCAACCTTTACAACCCACATCCGCTGCAAATTTAGGCTTGAAAACACAGGGATCTAATCTCAGTTCCATTTCTGATTTGGAGTTTTACCAAAGAAACCTACTGTTGGGAGGTGATGCACCTTCTGCTTCTTTGGATGAGGACTTATATTCTTACTGGATACAAGGTGAATGTTATAATATGAACTTCGGTCTGCAGAGTGTAGCGATGCCTGAGTTTTATGATCCAGGGCTTATTGCAGAAGTTCCACCCCACTTATATGATTCAACTGATTATACAGTTATAGATCAAGGTCTATTCATAGCATGA 1752 0.4058 MENGCFPSPPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYDVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAREFESFESFEGNYLMRNGSELSDDGNLFALEDMTSSKKRKDADNKHDDKEFVDPSSTKKARVVWSVDLHQKFVRAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKDDEQKSSSSGMKISDLPTKEVGSFGLHNSVTKQQNDVSIDSCNYPDGALQIQKVETKSQEGNTKGIVSQSTMEEKGRALTGNNNITDVMREGLQVGLNQPFALPESKGNCTSFDCAIPTKYSWTEVPGMQLKEEQKSIVQLEDSFNQLPPLLGKQHHIQVDQSQSIASISSTPSIMKEDVPACIETKPVFSDYKSSYTSSISSKVSALDTFPIQPGSLMMSDQPLQPTSAANLGLKTQGSNLSSISDLEFYQRNLLLGGDAPSASLDEDLYSYWIQGECYNMNFGLQSVAMPEFYDPGLIAEVPPHLYDSTDYTVIDQGLFIA* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0930 583 PIRSF RR_ARR_type-B 2 556 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lja6g0930 583 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lja6g0930 583 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Lja6g0930 583 SMART REC_2 18 130 IPR001789 GO:0000160
Lja6g0930 583 SUPERFAMILY CheY-like 17 145 IPR011006 -
Lja6g0930 583 CDD REC_typeB_ARR-like 20 134 - -
Lja6g0930 583 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Lja6g0930 583 Gene3D - 196 259 - -
Lja6g0930 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 558 - -
Lja6g0930 583 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Lja6g0930 583 Gene3D - 18 191 - -
Lja6g0930 583 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Lja6g0930 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 558 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0930 Lja-Chr6 20522384 20527106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0930 14 266 Response Regulator Gene Family AT2G25180 56.641 4.80e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja6g0930 Response_reg 4.1e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0930 - K14491 gmx:100797421 878.241