Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0914 ATGGCATTTCCGATCATACTGATGTTCTTGCTTCTTACACCAACTTTGATCTTTTCTTCCCCAGTCCAAGATCCTGAATCAGTTGTCCAGGAAGTTCAGAAGAGCATCATTGAGCATAGGAGAAAATTGGGTTTTTATTCATGTGGAACAGGCAACCCCATTGATGATTGTTGGAGGTGCGACCCCAATTGGGAAAACAACCGCAAACGGCTAGCAGAATGTGCAATCGGGTTTGGCAGACATGCCATTGGAGGAAGGGATGGCAAGTTTTATCTGGTCACGGACCCCAGTGACCACGCAGTGAACCCCAAGCCAGGAACTCTAAGACACGCTGCAATCCAACAAGAGCCCTTGTGGATCATATTCAAGCATGACATGGTGATCAAGCTCGAGATGGATCTCGTTATGAACTCTTACAAGACCATTGATGGTAGAGGAGCTAATGTCCACATTGCTGGAGGGCCTTGCATCAAGGTGCAGAGAAAGACCAACATCATAATCCATGGCATTAGTATCCATGACTGCAAACGCGGTGGCAGTGGCTGGAGAGGACGATCAGACGGTGATGGGGTCACGATTTATGATTCGAGCAATGTTTGGGTGGACCATTGTTCTTTGTCGAACTGTTTTGATGGGTTGATTGATGTTGTTCATGGATCAACGGCTATTACCATTTCGAACAATTACATGACGCACCATAACAAGGTCATGCTCTTGGGTCATAGTGATTCCAATAAAGAGGATAAAAAGATGCAGGTTACGATTGCTTTCAACCATTTTGGAGAAGGACTTGGGGGAAGAATGCCCAGGTGCAGGTTCGGATATTTCCACGTGGTGAACAATGATTACACACATTGGCAGAAGTACGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAACAGATTTCTTGCTCCAAATGATGAAGAACACAAAGAGATCACCAAACATTTTGGATCATCGGAGAATGAATGGAAGAACTGGAACTGGAGGTCTGAAGGGGATTTAATGCTGAATGGCGCCTTCTTCAGTCCGTCCGGAGCCGGTGCAACTTCTACATATGCTAGGGCGTCAAGCATGGAAGCAAGACCACCAATGCTTGTGGCTTCAATGACAGCAGGGGCTGGAGCTCTTAGATGCAAGAAAGACTACATGTGCTACTAG 1173 0.4629 MAFPIILMFLLLTPTLIFSSPVQDPESVVQEVQKSIIEHRRKLGFYSCGTGNPIDDCWRCDPNWENNRKRLAECAIGFGRHAIGGRDGKFYLVTDPSDHAVNPKPGTLRHAAIQQEPLWIIFKHDMVIKLEMDLVMNSYKTIDGRGANVHIAGGPCIKVQRKTNIIIHGISIHDCKRGGSGWRGRSDGDGVTIYDSSNVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSNKEDKKMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQKYAIGGSSSPTIFSQGNRFLAPNDEEHKEITKHFGSSENEWKNWNWRSEGDLMLNGAFFSPSGAGATSTYARASSMEARPPMLVASMTAGAGALRCKKDYMCY* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0914 390 Gene3D - 51 382 IPR012334 -
Lja6g0914 390 SUPERFAMILY Pectin lyase-like 52 380 IPR011050 -
Lja6g0914 390 PANTHER PECTATE LYASE 18-RELATED 5 386 IPR045032 GO:0030570
Lja6g0914 390 Pfam Pectate lyase 134 306 IPR002022 -
Lja6g0914 390 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Lja6g0914 390 PRINTS Pollen allergen Amb family signature 133 149 IPR018082 -
Lja6g0914 390 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Lja6g0914 390 PRINTS Pollen allergen Amb family signature 97 122 IPR018082 -
Lja6g0914 390 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Lja6g0914 390 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Lja6g0914 390 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Lja6g0914 390 PANTHER PECTATE LYASE 5 386 - -
Lja6g0914 390 SMART amb_all 125 312 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0914 Lja-Chr6 20129525 20132331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0914 1 389 Polysaccharide Lyase AT5G63180 66.089 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0914 K01728 - gmx:100801136 669.848