Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0910 ATGGAAGAAGAACAAACCACCACTGTCTCCGCCGGAACAACCTTAGACCCCAAAGCCAAAGAGTTCACACCCACTAACACTAACACTAACCACATTCCTATCATACCCCTCGCCGTCACCCCTCCGGCGAAGTTGTCAACCTCCCCCACCCGCTCCCTCCTCCTCACCCCTGTCCCCTTAACCACCGAGTCCGCCCTACGTAGAGACCTTGAGCCGTTCGGCGACGTCAGGGCCGTCCAGATGGAGCACCTCCGTCACGGCATTGTCACCGTCCATTTCTACGACCTCCGCCACGCCGAGGCCGCCTTCACCGCCATCCGCACCCTTCACATGCACTGCGCCTCCTTCTTCAGCCACCACCCTCACTTATATTACTACACCGCCGTGCATCCGCCGCCTGCAGGCCTCATCGCCGGCCGCGCTGTGTGGGCCCACTACGTCGTCCCCACCCCCAGTGCCGCCCTCCCCGACGCTCACAACCAAGGAACCCTCGTCGTTTTCAAGTTGTCTCCCGACGTGTCCACTCAGAATCTTCGACGAGTTTTTGAACCTTTCGGTGCCATAAAGGAACTGAGAGATACACCATGGAAAAAGAAGCAGAGATTTGTTGAGTTCTTTGACACAAGAGACGCAGAGATGGCTTTGAAACAGATGAATGGGAAGGAAATTCATGGCAAACCGGTTGCTATTGAGTTCAGCAGACCAGGAGGTAACGGAAGAAAGAAGTTACTCCATTCTGGTCCCTCTTCGCCTCCTCTTAACATGAACATCACACCACTTCTATTGTACCCACCACCACCACCACCACCATTTTATCATTCTCATTTTATTACTTCTAGCTTGAATTCCTCTCAACCTCCTCAACTACGTCGCAAGAAATCGGACCGGGGAGGATTGAAGAAAGTGGCGAATTCTGAGCCTGTTGAATTAGTTGGAAGTAGATTTGGGGTTGGAGAGTGGTATTCACAATCACAGGGTCCACCAAGGAGGAATCTTATTAGAAAGCATAGTGGCGACACCAGAGCGGGAAGCACGAAACAGAGGCAGCAGCAACAACTATCTAGAAGCAGACATTGGAAAGGGAAGCCCGAGAAGAAGCACGAAGCTCGGTTTCTCATCAAAGAAGATGAAATTGTGGAGTCCAGTTCCAGAGATTCTAGAACTACTCTCATGATCAAGAACATACCCAACAAGTACAGCCAGAAGCTGCTACTAAACATGCTGGACAAGCACTGCATTCACTGTAACGATCAGATCGGCGACAGTGATGAGGCGCAGCCTCGATCCTCCTATGACTTCGTGTATCTTCCCATTGATTTCAACAACAAATGCAATGTTGGATACGGGTTCGTGAACATGACATCTCCTGAGGCAGCACTGAGGCTCTACAAGGCTTTACATCTCCAACACTGGGAAAGATTTAATTCAAAAAAAATTTGTGAAGTCACCTACGCTAGAGTTCAGGGGTTGGAGGCATTGAAAGAGCATTTCAAGAATTCAAAGTTCCCATGCGAGATGGAGCATTACTACAACTTGCCAGTGGTGTTTTCACCGCCTCGAGATGGGAGGGAAGTAGTGACGGAGCCACTTCCAATAGTGGGGAACAACAAGCTGCTGCTGCTGCAGGGAAACATGGTTAATCCAATCGGTGATGTGACGGGGAGTGATGGTGGAGATGATGGGGCAGGTGGTGGTGATGGTGACGTGGCTAGCAGCAAAAGTGGCGGCGTGGGTGATGAAGCTAGCTAG 1749 0.5111 MEEEQTTTVSAGTTLDPKAKEFTPTNTNTNHIPIIPLAVTPPAKLSTSPTRSLLLTPVPLTTESALRRDLEPFGDVRAVQMEHLRHGIVTVHFYDLRHAEAAFTAIRTLHMHCASFFSHHPHLYYYTAVHPPPAGLIAGRAVWAHYVVPTPSAALPDAHNQGTLVVFKLSPDVSTQNLRRVFEPFGAIKELRDTPWKKKQRFVEFFDTRDAEMALKQMNGKEIHGKPVAIEFSRPGGNGRKKLLHSGPSSPPLNMNITPLLLYPPPPPPPFYHSHFITSSLNSSQPPQLRRKKSDRGGLKKVANSEPVELVGSRFGVGEWYSQSQGPPRRNLIRKHSGDTRAGSTKQRQQQQLSRSRHWKGKPEKKHEARFLIKEDEIVESSSRDSRTTLMIKNIPNKYSQKLLLNMLDKHCIHCNDQIGDSDEAQPRSSYDFVYLPIDFNNKCNVGYGFVNMTSPEAALRLYKALHLQHWERFNSKKICEVTYARVQGLEALKEHFKNSKFPCEMEHYYNLPVVFSPPRDGREVVTEPLPIVGNNKLLLLQGNMVNPIGDVTGSDGGDDGAGGGDGDVASSKSGGVGDEAS* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0910 582 Pfam RNA recognition motif 2 387 498 IPR007201 -
Lja6g0910 582 SMART rrm1_1 163 231 IPR000504 GO:0003723
Lja6g0910 582 SMART rrm1_1 52 124 IPR000504 GO:0003723
Lja6g0910 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 235 IPR000504 GO:0003723
Lja6g0910 582 SUPERFAMILY RNA-binding domain, RBD 163 467 IPR035979 GO:0003676
Lja6g0910 582 MobiDBLite consensus disorder prediction 319 366 - -
Lja6g0910 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 228 IPR000504 GO:0003723
Lja6g0910 582 Gene3D - 156 242 IPR012677 -
Lja6g0910 582 MobiDBLite consensus disorder prediction 550 582 - -
Lja6g0910 582 Gene3D - 335 493 IPR012677 -
Lja6g0910 582 MobiDBLite consensus disorder prediction 274 305 - -
Lja6g0910 582 CDD RRM3_EAR1_like 387 489 IPR034458 -
Lja6g0910 582 PANTHER RNA BINDING PROTEIN 28 535 - -
Lja6g0910 582 PANTHER TERMINAL EAR1-LIKE 1 28 535 - -
Lja6g0910 582 SUPERFAMILY RNA-binding domain, RBD 49 106 IPR035979 GO:0003676
Lja6g0910 582 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0910 Lja-Chr6 19840809 19843463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0910 157 288 Eukaryotic Initiation Factors Gene Family AT4G34110 27.536 8.94e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0910 - - var:108327668 595.504