Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0909 ATGAGAATTGAATATCTTAAATCAGTACTCAGACAAGAAGTTGGTTTCTTCGACAAGCAAACTGACTCTTCTACAACTTTCCAAGTAATTGACACCATAACTTCCGATGCTCAAACTATCCAAGACACCATGGCTGATAAGATACCAAATTGTCTGGGTCAACTCTCAGCACTTATCTCTAGCTTTATAGTGGCACTGTTCCTTTCATGGAGACTTGCAATAGCTGCTTTTCCATTTTCAATTATGATGATCATGCCAGCACTCATATTTGGGAAGGCTATGAAAGATCTGGGAATTAAAATGAAGGATGCTTATGGGGTTGCTGGTAGTGTAGCAGAACAAGCAATCTCATCGATTCGAACTGTTTATTCATATGTAGGTGAGAAACAAACACTAAACAGGTTCAGCTCTGCTCTTGAGAAAAGCATGGAGCTTGGCATAAAGCAAGGTCAAACAAAGGGTGTGGTTATTGGAAGTATTGGGTTGCTATATGCTACATGGGCATTCCAATCTTGGGCTGGGAGTGTTCTGGTCAGGACCAAAGGAGAAAGTGGTGGCCAGGTTTTTGTTGCTCAGATATGTATCATCTGGGGAGGAATATCTCTGATGAGTGCACTCCCGAACCTTGCTTTTATAATAGAGGCATCAGTGGCTGTTACCCGGATTTTCGAGATGATTGACCGAAAGCCAAGTATAAACGCTAATGGAGAAAAAGGAAGGCTCTTAAAACATGCAAGAGGAGAGATAACATTTCAAGAAGTTGATTTCAGTTACCCTTCAAGGCCTGATACACTGATTCTCCAAGGACTCAATCTAAAAGTGCAGGCTGGTAAAACAGTAGGCCTAGTTGGAGGGAGTGGTTCTGGCAAATCAACTATCATCTCTTTGCTTCAACGATTTTATGATTCTATATGTGGTGAGGTACTGCTTGATGGATATGACATAAAGAGGCTAAACCTTAAGTGGTTAAGGTCCCTGATGGGACTTGTAAATCAAGAGCCAATTCTCTTTGCAACATCCATTAGGGAGAACATTCTGTTTGGCAAGGAAGGAGCATCAATGGAAGCTGTCACAAGCGCCGCAAAAGCGGCAAATGCACATGATTTCATTGTCAAACTTCCTGATGGATATGAAACTCAAGTAGGACAACTAGGAGCTCAGTTGTCTGGAGGTCAAAAGCAAAGGATTGCCATTGCAAGGGCTTTAATAAGGGATCCTAAAATCCTACTACTTGATGAAGCCACTAGTGCTTTGGATTCACAGTCTGAAAGAGTAGTGCAAGACGCTCTTGACTTAGCTTCTAGAGGCAGAACGACAATCATTATCGCTCATCGCCTATCCACAATTCGCAAGGCTGATTCAATAGTAGTTCTTCAGTCAGGAAGAGTGGTTGAATCTGGTTCCCATGATGAATTGCTTCAACTCAACAATGGACAAGGTGGGGCTTACAGCAAAATGCTACAACTGCAACAAGCAACTCAAAATGAAAATGCAGTTCATCAAATAAATGCAATGGAAAATTTAACTAGTGCAGTAAATTCAAGCAGGCCAAGTACCCCTTCACATCATCAATTTAGCCCTGCACTACCATTTAGCCCCATATATTCAATCAGTTTTATAGATTCCAGCTATGATGACTACAGCATCGACGAAAACTCAGCAAAATCTTCTTCCCATTCAAACTTCTCCCAATGGCGTTTAATAAGAATGAATGCTCCTGAATGGAAGCATGCTTTGCTTGGATGTTTAGGTGCCATTGGCTCTGGAATATGCCAACCAATTTATTCCTATTTCTTGGGACTAGTTGCATCTGTCTACTTTATAAAAGATAACTCTCGCATCAAATCACAAATCACTTTGTACTCATCCATCTTCTGCTGCATAGCCATTGTAAACTTCATCTCAGGCCTCATTCAGCATTACAATTTTTCCATAATGGGAGAGCATTTGCTGAAAAGGGTGCGCGAAGTTTTGCTAGAAAAGGTGCTGACCTTTGAGGTTGGATGGTTTGATCAAAAGGAGAACACAAGTGCAGCAATATGTGCTCGTCTGGCAACTGAATCAAACTTGGTTCGATCCCTTGTCGCGGAACGAATATCATTGTTAGTTCAGGTTTTCGTCACAGCTTCGCTGGCTTTCGTGCTCGGTTTAATCGTTTCATGGAGGGTGGCCATTGTCATGATTGCAATGCAGCCTTTCATCATCATGTCTTTGTATTCCAAAAGCATTCTCATGAAGAGCATGTCAGGAAAAGCAAGAAAAGCTCAAAGAGAGGCTAGTCAATTAGCCATGGAAGCTACCATCAACCACCGAACTATCACTGCATTCTCTTCTGAGAAAAGGATGCTAATTTTGTTCAAAACCGCCATGGAAGGCCCCAGGAAGCAAAGCATCAAGCAATCATGGATATCAGGTTCCATATTATCATTCACACAATTTATAACAACAGCTTCTGTAACTCTGACTTTTTGGTATGGAGGAAGGTTACTGAATCAAGGGTTGGTGGAATCAAGAAATCTTTTGCAAGTTTTCCTCATTTTGATGGGAACAGGTAAACAAATTGCAGACACTGGAAGCATGAGTTCTGACATAGCTAAAGGTGGAAGAGCCATCAATGCAGTATTTGCAATGCTGGATAGGAAAAGTCAGATTGAACCTGAAGATTCTAGGCATAGACTGGTGAAAAAGAACCTGAAGGGCCATATAAAACTGAAAGAGGTGTTTTTTTCATACCCTGCAAGGTCAGAACAAATGATTCTCAAGGGGCTCAGTCTGGAGATTGAAGCAGGCAAAACAGTAGCATTAGTTGGACAGAGTGGTTCAGGAAAATCCACCATCATTGGCTTGATTGAAAGATTTTATGACCCCATGAGGGGTTCCATATCCATAGACAATCATGACATTAGAGAATTTAACTTGAGAAGTTTGAGGTCACATATTGCCCTGGTGAGTCAGGAGCCAACCCTCTTTGCAGGAACAATACGAGACAATATTGTCTATGGGAAGGAGGATGCTTCAGAGGATGAAATCAAAAGAGCAGCATGCCATGCAAATGCTCACGAGTTTATAAGTTCAATGAGAGATGGGTATGATACATACTGTGGAGAAAGAGGGGTGCAGCTCTCTGGAGGGCAGAAGCAGAGGATAGCAATTGCTCGAGCAATGCTCAAGAATCCATCAATCCTTCTGTTAGATGAGGCAACGAGTGCTCTAGACAGCGAGTCAGAGAATCTGGTGCAGGAGGCGCTAGAAAAGATGATGGTTGGAAGAACATGTGTGGTCATAGCTCACCGTTTGTCAACAATACAGAGTGCTGACTCCATAGCTGTCATTAAGAATGGGAAGGTGGTGGAACGAGGATCACACTCAGAGTTATTGAATATTGGATCAAATGGGACTTATTACTCCTTAATTAGGCTACAACATGGCCACTCAACTTGA 3441 0.4196 MRIEYLKSVLRQEVGFFDKQTDSSTTFQVIDTITSDAQTIQDTMADKIPNCLGQLSALISSFIVALFLSWRLAIAAFPFSIMMIMPALIFGKAMKDLGIKMKDAYGVAGSVAEQAISSIRTVYSYVGEKQTLNRFSSALEKSMELGIKQGQTKGVVIGSIGLLYATWAFQSWAGSVLVRTKGESGGQVFVAQICIIWGGISLMSALPNLAFIIEASVAVTRIFEMIDRKPSINANGEKGRLLKHARGEITFQEVDFSYPSRPDTLILQGLNLKVQAGKTVGLVGGSGSGKSTIISLLQRFYDSICGEVLLDGYDIKRLNLKWLRSLMGLVNQEPILFATSIRENILFGKEGASMEAVTSAAKAANAHDFIVKLPDGYETQVGQLGAQLSGGQKQRIAIARALIRDPKILLLDEATSALDSQSERVVQDALDLASRGRTTIIIAHRLSTIRKADSIVVLQSGRVVESGSHDELLQLNNGQGGAYSKMLQLQQATQNENAVHQINAMENLTSAVNSSRPSTPSHHQFSPALPFSPIYSISFIDSSYDDYSIDENSAKSSSHSNFSQWRLIRMNAPEWKHALLGCLGAIGSGICQPIYSYFLGLVASVYFIKDNSRIKSQITLYSSIFCCIAIVNFISGLIQHYNFSIMGEHLLKRVREVLLEKVLTFEVGWFDQKENTSAAICARLATESNLVRSLVAERISLLVQVFVTASLAFVLGLIVSWRVAIVMIAMQPFIIMSLYSKSILMKSMSGKARKAQREASQLAMEATINHRTITAFSSEKRMLILFKTAMEGPRKQSIKQSWISGSILSFTQFITTASVTLTFWYGGRLLNQGLVESRNLLQVFLILMGTGKQIADTGSMSSDIAKGGRAINAVFAMLDRKSQIEPEDSRHRLVKKNLKGHIKLKEVFFSYPARSEQMILKGLSLEIEAGKTVALVGQSGSGKSTIIGLIERFYDPMRGSISIDNHDIREFNLRSLRSHIALVSQEPTLFAGTIRDNIVYGKEDASEDEIKRAACHANAHEFISSMRDGYDTYCGERGVQLSGGQKQRIAIARAMLKNPSILLLDEATSALDSESENLVQEALEKMMVGRTCVVIAHRLSTIQSADSIAVIKNGKVVERGSHSELLNIGSNGTYYSLIRLQHGHST* 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0909 1146 Gene3D ABC transporter type 1, transmembrane domain 1 504 IPR036640 GO:0005524|GO:0016021
Lja6g0909 1146 SUPERFAMILY ABC transporter transmembrane region 566 885 IPR036640 GO:0005524|GO:0016021
Lja6g0909 1146 Coils Coil 745 765 - -
Lja6g0909 1146 Gene3D ABC transporter type 1, transmembrane domain 563 888 IPR036640 GO:0005524|GO:0016021
Lja6g0909 1146 CDD ABC_6TM_Pgp_ABCB1_D2_like 568 884 - -
Lja6g0909 1146 Gene3D - 239 491 IPR027417 -
Lja6g0909 1146 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 902 1138 IPR003439 GO:0005524
Lja6g0909 1146 PANTHER OS04G0481700 PROTEIN 1 1143 - -
Lja6g0909 1146 SMART AAA_5 929 1122 IPR003593 -
Lja6g0909 1146 SMART AAA_5 276 462 IPR003593 -
Lja6g0909 1146 Pfam ABC transporter 267 416 IPR003439 GO:0005524
Lja6g0909 1146 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 1143 IPR039421 -
Lja6g0909 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 893 1141 IPR027417 -
Lja6g0909 1146 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 222 - -
Lja6g0909 1146 ProSitePatterns ABC transporters family signature. 1041 1055 IPR017871 GO:0005524
Lja6g0909 1146 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 249 485 IPR003439 GO:0005524
Lja6g0909 1146 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 579 866 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g0909 1146 CDD ABC_MTABC3_MDL1_MDL2 249 490 - -
Lja6g0909 1146 CDD ABC_MTABC3_MDL1_MDL2 902 1141 - -
Lja6g0909 1146 Pfam ABC transporter 920 1069 IPR003439 GO:0005524
Lja6g0909 1146 SUPERFAMILY ABC transporter transmembrane region 1 230 IPR036640 GO:0005524|GO:0016021
Lja6g0909 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 490 IPR027417 -
Lja6g0909 1146 Pfam ABC transporter transmembrane region 580 846 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g0909 1146 Pfam ABC transporter transmembrane region 1 190 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g0909 1146 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 214 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g0909 1146 Gene3D - 892 1145 IPR027417 -
Lja6g0909 1146 ProSitePatterns ABC transporters family signature. 388 402 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0909 Lja-Chr6 19812329 19817787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0909 1 496 Calmodulin-binding Proteins AT2G36910 38.523 4.93e-100 343