Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0900 ATGAACTCAGTTCATTTTGTGTCAGCAGCAGCTATCATCACCACTCACTCTAACAACCCCAAACTTGTTTCCTTCTTCAAAACCAAAACCAAAACCAAAACCAAACCTTACTCCCTCAATTGCTCCTTTCACCTTTCCAAGCTCCAAGTTTCAGCGCTCAAGGATCAGCCTCCCAAGTCAGAGACTCATAATACTGCTTCAGATGATGATGAAGGTGCAAAACTTCCACTTGATGAAAATGGCGGAAAAAGTTTTGATCTTGGATGGTTCCCTGTTTTTCCTCACGTTCTGCTTGCTTCAATGTCTAATTTCATCTTTGGGTATCATATTGGGGTCATGAATGGTCCTATTGTTTCCATAGCCCATGAGCTTGGTTTTGAGGGAAATTCATTCATTGAGGGACTTGTGGTCAGCATATTTATTGCTGGTGCATTTATTGGGAGCGTAAGCGCTGGTTCTTTGGTGGACAAACTCGGTTGTCGGCTCACGTTTCAGATTGATACCATACCCTTAATCCTCGGGGCAGTGATAAGTGCTAAAGCCCAGTCCTTGAATGAGATACTTGGAGGAAGATTTCTTGTTGGTCTTGGTATAGGTGTGAACACTCTTCTTGTTCCATTGTATATATCTGAGGTTGCTCCAACAAAATATCGGGGTGCCCTAGGGTCCTTTAGTCAAATTGGCACTTGCCTTGGCATTATTGCTTCACTATTTCTTGGAATTTCTTCTGAGAACGATCCACATTGGTGGAGGACAATGCTGTATATTGCAAGTATCCCTGGTTTTATTGTTGCACTTGGTATGCAATTTTCTGTTGATAGTCCACGCTGGCTTTGCAAGACTGGGAGAATAAATGATGCTAAAACAGTAGTACGTGAGCTTTGGGGAGCATCTGAAGTTGAGAGTGCAATTAAAGAATTCCAGTCTGTTAGCAAGAATGATGGTAGGGATTTGGACAGCAGATGGTCAGAGATTTTGGAGGAGCCACATTCTAGAGTTGCCTTCATTGGAGGTACTCTTTTCGTACTTCAGCAGTTTTCAGGCATAAACGGAGTTCTTTATTTTTCATCACTGACATTTCGAGATGTTGGAGTTCAAAGCAGTGCATTAGCAAGCTTGTTTGTTGGGCTAACTAACTTTGCAGGTGCACTTTCTGCTTTATACTTGATCGATAGAGAAGGGAGACAAAAACTTTTGATTGGAAGCTACTTAGGAATGGCAATGTCATTGTTTCTTGTGGTATGTGCTGTGATCTTTCCATTGGATAAGCAACTCAACGACAACTTATCAATAATAGGAACTATCATGTATATATTCTCTTTTGCAATTGGAGCTGGCCCAGTAACTGGCATCATTATACCAGAGCTTAGTAGTACCAGGACACGAGGGAAGATCATGGGGTTCAGTTATTCAACCCATTGGGTATGCAACTTTGTGGTGGGATTGTTCTTCCTTGAGATGGTGGAGAAATTTGGAGTTGCACCAGTATATGTCAGCTTTGGAGCAGTTTCCCTGTTAGCCGCATTATTTGCCTATTACTTCATAGTAGAAACTAAGGGGCGCTCTCTAGAAGAAATTGAAAGGTCCTTAAACCCAAAAGCTTGA 1605 0.4193 MNSVHFVSAAAIITTHSNNPKLVSFFKTKTKTKTKPYSLNCSFHLSKLQVSALKDQPPKSETHNTASDDDEGAKLPLDENGGKSFDLGWFPVFPHVLLASMSNFIFGYHIGVMNGPIVSIAHELGFEGNSFIEGLVVSIFIAGAFIGSVSAGSLVDKLGCRLTFQIDTIPLILGAVISAKAQSLNEILGGRFLVGLGIGVNTLLVPLYISEVAPTKYRGALGSFSQIGTCLGIIASLFLGISSENDPHWWRTMLYIASIPGFIVALGMQFSVDSPRWLCKTGRINDAKTVVRELWGASEVESAIKEFQSVSKNDGRDLDSRWSEILEEPHSRVAFIGGTLFVLQQFSGINGVLYFSSLTFRDVGVQSSALASLFVGLTNFAGALSALYLIDREGRQKLLIGSYLGMAMSLFLVVCAVIFPLDKQLNDNLSIIGTIMYIFSFAIGAGPVTGIIIPELSSTRTRGKIMGFSYSTHWVCNFVVGLFFLEMVEKFGVAPVYVSFGAVSLLAALFAYYFIVETKGRSLEEIERSLNPKA* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0900 534 MobiDBLite consensus disorder prediction 54 75 - -
Lja6g0900 534 SUPERFAMILY MFS general substrate transporter 90 527 IPR036259 -
Lja6g0900 534 TIGRFAM SP: MFS transporter, sugar porter (SP) family 92 526 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g0900 534 ProSitePatterns Sugar transport proteins signature 2. 193 218 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja6g0900 534 PANTHER PLASTIDIC GLUCOSE TRANSPORTER 1-RELATED 17 533 - -
Lja6g0900 534 CDD MFS_GLUT_like 98 517 - -
Lja6g0900 534 PANTHER - 17 533 IPR045263 -
Lja6g0900 534 PRINTS Sugar transporter signature 431 452 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g0900 534 PRINTS Sugar transporter signature 103 113 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g0900 534 PRINTS Sugar transporter signature 188 207 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g0900 534 PRINTS Sugar transporter signature 344 354 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g0900 534 MobiDBLite consensus disorder prediction 61 75 - -
Lja6g0900 534 Pfam Sugar (and other) transporter 97 528 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja6g0900 534 Gene3D MFS general substrate transporter like domains 91 532 IPR036259 -
Lja6g0900 534 ProSiteProfiles Major facilitator superfamily (MFS) profile. 95 519 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0900 Lja-Chr6 19677845 19685340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0900 112 533 Organic Solute Cotransporters AT1G05030 75.829 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0900 - - lja:Lj0g3v0001729.1 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0900 6 19677845 19685340 Lja6g0900 6 19677845 19685340 ECH
Lja6g1199 6 35501985 35503033 Lja6g0900 6 19677845 19685340 PCT