Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0892 ATGGAAGCAGATAATTGCAAAATATTTATTGGTGGAATATCATGGGATACAAATCAAAGGCGACTCAGGCAATATTTTAGTGCTTATGGGAAAGTCATGGAATCAGTGATCATAAAGGATCGGACAACACGTAGAGCCCGTGGATTTGGCTTTGTTGCCTTTTCAGACCCAGCTGTTGCTGAAGAAGTGTTGAAAAAGAAGCACAAGATTGATGGAAAGATGGTCGATGTTAAGAAAGCTGCACCTAAGAATGGTTCTCCAGGTCCATACCGCTCGACAAAGATATTTGTTGGAGGTTTAGCATCAACAGTTACAGAGAGTGATTTCAAAAAGTACTTTGATCAATTTGGGACGATAAAAGATCTGGTTGTGATGTGTGACCCCAACACTCAGAGGCCAAGAGGGTTTGGATTTATCACTTATGATTCTGAGGAAGCTGTTGACTCAGTCTTTCTCAGGAGTTTCCATGAATTGAATGGAAAAATGGTTGAGGTCAAGCGCGCAGTTCCTAAGGAGCTATCACCAGGACCAAACCACAGCCCACTTAGTGTATATAACTATGATCTCAGCGGAGTCAATAGCTTCATAAATGGCTTCACTCAAGGATATTGTCCTAGTAATGTTGGAGGGTACGGACTTTGCGTTGATGGTACAGTTAGTCCTATTGCTAGAGGTCGAATTGGATTTCCTCTATTCGGTTCTGGTTATGGAATGAGTCCAAATTTTGAGCCTGTTTTGAACCATGAATTCCGGGGAAATGAAAATTTCTATAGTGATCTTAGCGTAAGCCGAGGATTAAATCCTGACTATTTTGACAGTTCAAAGAGATTTGCAAGTTCTATTGGATATGATGGTGGTAATGGCAGAAGCAATTCTTTCTTCAGCTCTGGGACTCAAAATTTGTATGGGAGTGGTGGCCTAAGTTATGGAACAAGTTCTGCCAATTCCACTGCATACATTGGATTAGGGGGTGGGACAGTTAGAGGAAACACAATTAGCAACACTGGAGTTGGTGTATCACTATCACTCAGTAATGGCAACCTCGGCTTTAGAGGTGAAAACAACAATAGTGGTTTGGGGATTGGAGGGTATCGAAGAAGCAGTGATGCTGATATACCCCTAACATCATCTTACTCTGCGCCAAATGGTGGTTTTGATGGACCTTTTTCTGAATTTTACAGTAGCAGTTCAGTTAATGATGACCCCATTTATCGGTCTTCGAATTTTGAGCCAGATGGATTTGATCCCTTTGGTTATGGACTTGGCGTCGTAGCTTCAGATGTTTCTGCCAAATGTTCTCCAGGTTATGTTGGAAGTTATACAGTCAACAAGAGGCAGCCAAATAAGGGAATTGCTACATAG 1362 0.417 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRIGFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYDGGNGRSNSFFSSGTQNLYGSGGLSYGTSSANSTAYIGLGGGTVRGNTISNTGVGVSLSLSNGNLGFRGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPFSEFYSSSSVNDDPIYRSSNFEPDGFDPFGYGLGVVASDVSAKCSPGYVGSYTVNKRQPNKGIAT* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0892 453 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 452 - -
Lja6g0892 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 170 IPR000504 GO:0003723
Lja6g0892 453 Gene3D - 3 86 IPR012677 -
Lja6g0892 453 SUPERFAMILY RNA-binding domain, RBD 91 314 IPR035979 GO:0003676
Lja6g0892 453 SMART rrm1_1 94 166 IPR000504 GO:0003723
Lja6g0892 453 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lja6g0892 453 Gene3D - 90 176 IPR012677 -
Lja6g0892 453 SUPERFAMILY RNA-binding domain, RBD 3 88 IPR035979 GO:0003676
Lja6g0892 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lja6g0892 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Lja6g0892 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 150 IPR000504 GO:0003723
Lja6g0892 453 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0892 Lja-Chr6 19598582 19601254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0892 8 172 Eukaryotic Initiation Factors Gene Family AT2G36660 28.723 1.28e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0892 K14411 - gmx:100795907 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0892 6 19598582 19601254 Lja6g0892 6 19598582 19601254 ECH