Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0891 ATGGCATTGGCAATTCCCACTTATATGGTGCTAGGAGCTTGGTGCAGCATACTTGTGATCTCTTCTTGGACTAGTTTCTTCTTCTGCATTGCAATTTCATCTAAATCATCACTAGACCTTGAAGCACAAGCACTTCTAGAAAGTGAGTGGTGGAGTGATTACACTAACCATGTTCCTACCCGTTGTAAGTGGCCAGGCATTACATGCAATGATGCTGGAAGCATCACAAACATTTCTTTGCCTACTGAAATCCAATTGGGAGACAAATTTGGCAGATTCAACTTCTCTTCCTTCCCAAACCTTGTTCACCTTGATCTTGCAGCACATGGAATCACAGGGAACATCCCACATGAGCTAGGTACTCTTTCAAAACTTGCTCATCTTGACCTCTCTTCTAATGATATTCATGGAGACATTCCATTAAATACTTGGAGTCTAAGGAATCTGGTGACCCTGAACCTGGCTAGAAATAGAGTTAATGGTTCAATTTCCCCTTTTGTGGGTCAGTTGACTAAGCTGAAATCACTTTCTCTTGGTGCCAATCTGATAAGTGGCTATATTCCTCCTGAGTTAGGAAGGCTTAAATATCTGATTCATTTGGATCTGAATAATAATTGCTTTATTGGTCCAATACCTGTGGAGATTGGTAGGTTGAACAGTTTGCAATATCTTTCTCTGGGCATGAACAAGTTGAATGGTTCCATACCTTTAGAAATAGGGAATTTGAACAACATTCTATATTTGGATCTTAATACCAACAATCTCAATGGGGTACTTTCAGTTTTGCATAGACTAACCAGTTTGATTGAACTAAACCTGTCCAACAATGAGATATTTGGTGATGTCCCACTAGAGATTACCCAATTGACCCAATTGGAGTATCTGATTATTTCAAGTAACAAAATTTTGGGTTCAATACCTCATGATATTGGGAAACTTTCCAAACTCTTGGTTCTGGACTTGTCTAGAAACAATTTGATTGGAAAAATCCCAGCCAGTCTTTCAACTTGCTCTAATCTGCAGGTGTTGACTTTGAGCTATAACAATATAACTGGAAGCATTCCCTCCCATATTGGTGATCTTGTTACACTTGATTTAATTGATTTGAGTCATAACTTAATAAGTGGAGAAATACCCTCTGATCTTGGGAAAGTGAAATACACAAGGGTCTTGGATCTCAACCATAATCAACTCACAGGAACCATTCCAAGTTCCCTAGAATCATTGCAGAGTATTAACTTGTCCTACAATTCTCTAGAGGGTGAGATCCCAGTTAGTCTCCACTATACGCCTAATGCATTCATTGGCAATGAGTATTTATGCCGCGGTCAAACTCATTGTTACTCCTCTTCCAGAACAAGTAGTAGATTAAGGACCCATATGAAGATTTTCCTTCCTCTCATAGCTGTTCTTGCTCTTCTATGCTGTGCATATGTGCTCCTCCGCCGCCGGTGGAGTTGTTGCTACTCAGAAACAGATGCAATAAAGAATGGTGACCTGTTTTCAGTATGGAACTATGATGGTAAAATTGCATATGAAGACATAATTGAAGCAACAGAAGGTTTTGACATCAAATATTGCCTAGGAACTGGTGGTTATGGTAGTGTCTACAAAGCACAGCTACCTAGTAGTGGTAGAGTAGTGGCTTTGAAGAAACTCCACAGTTTAGAAGCCAATGAACCGGAAATCCGCAGGATTTTCAAGAATGAAGTGAGAATGTTGACAAAGATAAGGCATCGAAATATCGCGAAGCTTTACGGATTCTGCTTGCACAACAGATGCATGTTTCTGGTTTTGGAATACATGGAAAGGGGGAGCTTATATTGTGTCTTACACAATGACATTGAAGCTGTTGAGTTAGACTGGACCAAGAGGATTAACATTGTGAAAGGCATAGCACATAGCTTATCATACCTTCATTATGATTGCAACCCAGCAATTATTCACAGAGATGTAACAACCAAGAACATTCTCTTGAATTCAGAAATGGAGGCTTGTCTCTCTGACTTTGGGATAGCTAGACTCCGAAATTCCACTTCCTCCATTCGAACAGTGCTCGCTGGAACTTACGGATATATTGCACCAGAACTTGCATATACAGATTCTGTGACTGAGAAATGTGATGTGTACAGTTTTGGAGTGGTTGCTCTTGAAATTATCATGGGAAAGCATCCTGGAGAACTTGTTTCCTCATTAAGATCTGCATCCACTCGAAGCATTCTCCTTAAAGATATGTTAGACCCAAGACTTATATCTACCATCAATCAGCAATCTGCTCAGAGTTTAGCTCTTGTAGCAACACTAGCATTTGCATGTCTTCACTCTCAGCCAAGGTGTAGGCCAACAATGCAAGAAGTGGCTAAAAAACTTGTGACAAGAAATTTCCCATCAACTAAACCTTTTGAAGAAGTTTCAGTAAGGGAGATGGTAAATCAGGAATTGTGA 2445 0.3988 MALAIPTYMVLGAWCSILVISSWTSFFFCIAISSKSSLDLEAQALLESEWWSDYTNHVPTRCKWPGITCNDAGSITNISLPTEIQLGDKFGRFNFSSFPNLVHLDLAAHGITGNIPHELGTLSKLAHLDLSSNDIHGDIPLNTWSLRNLVTLNLARNRVNGSISPFVGQLTKLKSLSLGANLISGYIPPELGRLKYLIHLDLNNNCFIGPIPVEIGRLNSLQYLSLGMNKLNGSIPLEIGNLNNILYLDLNTNNLNGVLSVLHRLTSLIELNLSNNEIFGDVPLEITQLTQLEYLIISSNKILGSIPHDIGKLSKLLVLDLSRNNLIGKIPASLSTCSNLQVLTLSYNNITGSIPSHIGDLVTLDLIDLSHNLISGEIPSDLGKVKYTRVLDLNHNQLTGTIPSSLESLQSINLSYNSLEGEIPVSLHYTPNAFIGNEYLCRGQTHCYSSSRTSSRLRTHMKIFLPLIAVLALLCCAYVLLRRRWSCCYSETDAIKNGDLFSVWNYDGKIAYEDIIEATEGFDIKYCLGTGGYGSVYKAQLPSSGRVVALKKLHSLEANEPEIRRIFKNEVRMLTKIRHRNIAKLYGFCLHNRCMFLVLEYMERGSLYCVLHNDIEAVELDWTKRINIVKGIAHSLSYLHYDCNPAIIHRDVTTKNILLNSEMEACLSDFGIARLRNSTSSIRTVLAGTYGYIAPELAYTDSVTEKCDVYSFGVVALEIIMGKHPGELVSSLRSASTRSILLKDMLDPRLISTINQQSAQSLALVATLAFACLHSQPRCRPTMQEVAKKLVTRNFPSTKPFEEVSVREMVNQEL* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0891 814 SUPERFAMILY Protein kinase-like (PK-like) 502 792 IPR011009 -
Lja6g0891 814 ProSitePatterns Tyrosine protein kinases specific active-site signature. 647 659 IPR008266 GO:0004672|GO:0006468
Lja6g0891 814 Gene3D Ribonuclease Inhibitor 32 190 IPR032675 -
Lja6g0891 814 ProSitePatterns Protein kinases ATP-binding region signature. 528 551 IPR017441 GO:0005524
Lja6g0891 814 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 146 357 - -
Lja6g0891 814 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 39 147 - -
Lja6g0891 814 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 262 790 - -
Lja6g0891 814 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 94 259 - -
Lja6g0891 814 Gene3D Ribonuclease Inhibitor 262 455 IPR032675 -
Lja6g0891 814 Gene3D Phosphorylase Kinase; domain 1 489 601 - -
Lja6g0891 814 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 146 357 - -
Lja6g0891 814 SUPERFAMILY RNI-like 94 428 - -
Lja6g0891 814 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Lja6g0891 814 Gene3D Ribonuclease Inhibitor 196 261 IPR032675 -
Lja6g0891 814 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 39 147 - -
Lja6g0891 814 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 262 790 - -
Lja6g0891 814 SMART LRR_typ_2 313 337 IPR003591 -
Lja6g0891 814 SMART LRR_typ_2 265 289 IPR003591 -
Lja6g0891 814 SMART LRR_typ_2 218 242 IPR003591 -
Lja6g0891 814 SMART LRR_typ_2 338 361 IPR003591 -
Lja6g0891 814 SMART LRR_typ_2 122 146 IPR003591 -
Lja6g0891 814 SMART LRR_typ_2 170 194 IPR003591 -
Lja6g0891 814 SMART LRR_typ_2 406 436 IPR003591 -
Lja6g0891 814 Pfam Protein kinase domain 526 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0891 814 Pfam Leucine Rich Repeat 389 409 IPR001611 GO:0005515
Lja6g0891 814 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 94 259 - -
Lja6g0891 814 ProSiteProfiles Protein kinase domain profile. 522 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0891 814 Gene3D Transferase(Phosphotransferase) domain 1 602 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0891 Lja-Chr6 19592779 19595409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0891 101 695 Receptor kinase-like Gene Family AT4G08850 39.219 1.98e-133 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja6g0891 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0891 - - aprc:113863342 1144.41