Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0889 ATGCTCCCTATGCGTCAACAGTCACAGGTTGGAGGGCTACAGACATCACTGTCTCTAGTTCCTTCGGATCCTCACCTCTCTCCTGATGAACCTAGATCAAACTCTGACCGTGAATCACCGACTGAAAGTGCCAGTTCTCAAGAAACTTGGCCTACAGCTGATGCCCCTGCAGCGAAGAAGGTGGAGAATGGAAAAGCAGAGATTAATTGCATTGAACAGTCAGTTATTCGTCGTGTTTCTAGCGCAGACAAAATTACTCTCCAGGACATTGCAAGAGAAAGTGTTGATATAATCTGTGAAAAAATGCATCGCCTTCCTGAGGAATTTCTAGAAGAGATGAAAAATGGACTTCGTCTTATCCTTGAGGGAGGTAATGGTTCACAACATAGAGAGGAATTTTTCATTTTGCAGAAACTTGTGCAGAGTAGAACTGATTTGACACCCAGGACACTGGTTAGAGCCCATCGTGTGCAGATTGAAATCCTTGCTGCAATAAATACTGGAATTCAGGGTTTTCTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGATAGAAATCTTTGGGTATAAGAGATGCAGAAACATAGCATGCCAAAACCAGCTTCCGGCCGATGATTGTACCTGTGAAATATGCACCAACAACAATGGTTTCTGCAATCTTTGCATGTGTGTGGTCTGCAACAAGTTTGACTTTGAAGTGAATACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTTATTTGCATGGGCCCTTCCGTGAAGAGCGGAGCAGGACCGAGTGAAATGGTTTTTAGGTGTCAAGCATGCAATAGGACGTCGGAACTGTTAGGTTGGGTTAAAGACGTCTTCCAGCATTGTGCGCCATCTTGGGATGGAGAGGCCTTCGTGAGGGAACTTGATTATGTAAGTAAGATCTTCCATGTTAGTAAAGACCCCCGAGGGAGGAAGCTATATTGGAAGTGTGACGATCTCAAGGAGAAATTAAGAACCAGAAAAATGGACTCAAAGGCCGCTTGCAGGGCAATATTGATGCTTTTCCAAGAGCTTGAGGTGGACTCTCCGAAAGGCCTTGAAAATGGAGAAAGTGGAAGGGTGGTTGCTCCACAGGATGCCTGCAACAGAATTGCGGAAGTGGTTCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTCGATGCTTGTGATCGTGAACTAGCAGACAAGGCCAGGGAAGTGGCAGAACTAAAGATGGAAAGGCAGAAAAAGAAGTCGCAGGTAGAAGAACTCGAGAAAATTGTGAGGCTTAAAAATGCAGAGGCTGACATGTTCCAATTGAAGGCTAACGAGGCTAAAAGAGAAGCTGAGAGACTTCAGAGGATCGCCCTTGCCAAGCAAGATAAGTCAGAGGAAGAATTTACCAGCAACTACCTGAAACAACGTTTAAATGAGGCTGAGGCTGAGAAGCAATATCTGTATGAGAAAATAAAATTGCAGGAGAGTTCTCGTGTTTCACATAGTGGTGGTGGTGGTGGTGGTAGCAGCGGCGGTGATCCCTCTCAAATACTGATGTATTCCAAAATTCATGATCTGCTGTACAATGTTCCTCCTAAGGCTGACAGTCAAGCTAATTTACGCCACCCTTTCCGGACAAATCCCTGA 1716 0.451 MLPMRQQSQVGGLQTSLSLVPSDPHLSPDEPRSNSDRESPTESASSQETWPTADAPAAKKVENGKAEINCIEQSVIRRVSSADKITLQDIARESVDIICEKMHRLPEEFLEEMKNGLRLILEGGNGSQHREEFFILQKLVQSRTDLTPRTLVRAHRVQIEILAAINTGIQGFLHPSISLSQTSLIEIFGYKRCRNIACQNQLPADDCTCEICTNNNGFCNLCMCVVCNKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSVKSGAGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEAFVRELDYVSKIFHVSKDPRGRKLYWKCDDLKEKLRTRKMDSKAACRAILMLFQELEVDSPKGLENGESGRVVAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALDACDRELADKAREVAELKMERQKKKSQVEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRVSHSGGGGGGSSGGDPSQILMYSKIHDLLYNVPPKADSQANLRHPFRTNP* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0889 571 Coils Coil 417 486 - -
Lja6g0889 571 SMART PHD_3 223 283 IPR001965 -
Lja6g0889 571 Pfam PHD - plant homeodomain finger protein 193 316 IPR032881 -
Lja6g0889 571 CDD PHD_OBE1_like 223 282 - -
Lja6g0889 571 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 561 IPR004082 -
Lja6g0889 571 MobiDBLite consensus disorder prediction 519 539 - -
Lja6g0889 571 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 101 123 IPR004082 -
Lja6g0889 571 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 184 205 IPR004082 -
Lja6g0889 571 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 230 250 IPR004082 -
Lja6g0889 571 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 143 158 IPR004082 -
Lja6g0889 571 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 158 173 IPR004082 -
Lja6g0889 571 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 303 322 IPR004082 -
Lja6g0889 571 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 485 507 IPR004082 -
Lja6g0889 571 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 446 466 IPR004082 -
Lja6g0889 571 PANTHER PROTEIN OBERON 2 1 561 - -
Lja6g0889 571 PIRSF UCP025218 1 558 IPR004082 -
Lja6g0889 571 MobiDBLite consensus disorder prediction 1 22 - -
Lja6g0889 571 Pfam Coiled-coil region of Oberon 411 550 IPR032535 -
Lja6g0889 571 MobiDBLite consensus disorder prediction 38 52 - -
Lja6g0889 571 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0889 Lja-Chr6 19571948 19574091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0889 193 295 PHD Gene Family AT5G57380 30.769 8.07e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0889 - - lja:Lj0g3v0001909.1 1129.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0889 6 19571948 19574091 Lja6g0889 6 19571948 19574091 ECH