Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja6g0889 | ATGCTCCCTATGCGTCAACAGTCACAGGTTGGAGGGCTACAGACATCACTGTCTCTAGTTCCTTCGGATCCTCACCTCTCTCCTGATGAACCTAGATCAAACTCTGACCGTGAATCACCGACTGAAAGTGCCAGTTCTCAAGAAACTTGGCCTACAGCTGATGCCCCTGCAGCGAAGAAGGTGGAGAATGGAAAAGCAGAGATTAATTGCATTGAACAGTCAGTTATTCGTCGTGTTTCTAGCGCAGACAAAATTACTCTCCAGGACATTGCAAGAGAAAGTGTTGATATAATCTGTGAAAAAATGCATCGCCTTCCTGAGGAATTTCTAGAAGAGATGAAAAATGGACTTCGTCTTATCCTTGAGGGAGGTAATGGTTCACAACATAGAGAGGAATTTTTCATTTTGCAGAAACTTGTGCAGAGTAGAACTGATTTGACACCCAGGACACTGGTTAGAGCCCATCGTGTGCAGATTGAAATCCTTGCTGCAATAAATACTGGAATTCAGGGTTTTCTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGATAGAAATCTTTGGGTATAAGAGATGCAGAAACATAGCATGCCAAAACCAGCTTCCGGCCGATGATTGTACCTGTGAAATATGCACCAACAACAATGGTTTCTGCAATCTTTGCATGTGTGTGGTCTGCAACAAGTTTGACTTTGAAGTGAATACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTTATTTGCATGGGCCCTTCCGTGAAGAGCGGAGCAGGACCGAGTGAAATGGTTTTTAGGTGTCAAGCATGCAATAGGACGTCGGAACTGTTAGGTTGGGTTAAAGACGTCTTCCAGCATTGTGCGCCATCTTGGGATGGAGAGGCCTTCGTGAGGGAACTTGATTATGTAAGTAAGATCTTCCATGTTAGTAAAGACCCCCGAGGGAGGAAGCTATATTGGAAGTGTGACGATCTCAAGGAGAAATTAAGAACCAGAAAAATGGACTCAAAGGCCGCTTGCAGGGCAATATTGATGCTTTTCCAAGAGCTTGAGGTGGACTCTCCGAAAGGCCTTGAAAATGGAGAAAGTGGAAGGGTGGTTGCTCCACAGGATGCCTGCAACAGAATTGCGGAAGTGGTTCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTCGATGCTTGTGATCGTGAACTAGCAGACAAGGCCAGGGAAGTGGCAGAACTAAAGATGGAAAGGCAGAAAAAGAAGTCGCAGGTAGAAGAACTCGAGAAAATTGTGAGGCTTAAAAATGCAGAGGCTGACATGTTCCAATTGAAGGCTAACGAGGCTAAAAGAGAAGCTGAGAGACTTCAGAGGATCGCCCTTGCCAAGCAAGATAAGTCAGAGGAAGAATTTACCAGCAACTACCTGAAACAACGTTTAAATGAGGCTGAGGCTGAGAAGCAATATCTGTATGAGAAAATAAAATTGCAGGAGAGTTCTCGTGTTTCACATAGTGGTGGTGGTGGTGGTGGTAGCAGCGGCGGTGATCCCTCTCAAATACTGATGTATTCCAAAATTCATGATCTGCTGTACAATGTTCCTCCTAAGGCTGACAGTCAAGCTAATTTACGCCACCCTTTCCGGACAAATCCCTGA | 1716 | 0.451 | MLPMRQQSQVGGLQTSLSLVPSDPHLSPDEPRSNSDRESPTESASSQETWPTADAPAAKKVENGKAEINCIEQSVIRRVSSADKITLQDIARESVDIICEKMHRLPEEFLEEMKNGLRLILEGGNGSQHREEFFILQKLVQSRTDLTPRTLVRAHRVQIEILAAINTGIQGFLHPSISLSQTSLIEIFGYKRCRNIACQNQLPADDCTCEICTNNNGFCNLCMCVVCNKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSVKSGAGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEAFVRELDYVSKIFHVSKDPRGRKLYWKCDDLKEKLRTRKMDSKAACRAILMLFQELEVDSPKGLENGESGRVVAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALDACDRELADKAREVAELKMERQKKKSQVEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRVSHSGGGGGGSSGGDPSQILMYSKIHDLLYNVPPKADSQANLRHPFRTNP* | 572 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja6g0889 | 571 | Coils | Coil | 417 | 486 | - | - | |
Lja6g0889 | 571 | SMART | PHD_3 | 223 | 283 | IPR001965 | - | |
Lja6g0889 | 571 | Pfam | PHD - plant homeodomain finger protein | 193 | 316 | IPR032881 | - | |
Lja6g0889 | 571 | CDD | PHD_OBE1_like | 223 | 282 | - | - | |
Lja6g0889 | 571 | PANTHER | VERNALIZATION-INSENSITIVE PROTEIN 3 | 1 | 561 | IPR004082 | - | |
Lja6g0889 | 571 | MobiDBLite | consensus disorder prediction | 519 | 539 | - | - | |
Lja6g0889 | 571 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 101 | 123 | IPR004082 | - | |
Lja6g0889 | 571 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 184 | 205 | IPR004082 | - | |
Lja6g0889 | 571 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 230 | 250 | IPR004082 | - | |
Lja6g0889 | 571 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 143 | 158 | IPR004082 | - | |
Lja6g0889 | 571 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 158 | 173 | IPR004082 | - | |
Lja6g0889 | 571 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 303 | 322 | IPR004082 | - | |
Lja6g0889 | 571 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 485 | 507 | IPR004082 | - | |
Lja6g0889 | 571 | PRINTS | Arabidopsis thaliana 130.7kDa hypothetical protein signature | 446 | 466 | IPR004082 | - | |
Lja6g0889 | 571 | PANTHER | PROTEIN OBERON 2 | 1 | 561 | - | - | |
Lja6g0889 | 571 | PIRSF | UCP025218 | 1 | 558 | IPR004082 | - | |
Lja6g0889 | 571 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lja6g0889 | 571 | Pfam | Coiled-coil region of Oberon | 411 | 550 | IPR032535 | - | |
Lja6g0889 | 571 | MobiDBLite | consensus disorder prediction | 38 | 52 | - | - | |
Lja6g0889 | 571 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja6g0889 | Lja-Chr6 | 19571948 | 19574091 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja6g0889 | 193 | 295 | PHD Gene Family | AT5G57380 | 30.769 | 8.07e-09 | 56.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja6g0889 | - | - | lja:Lj0g3v0001909.1 | 1129.78 |