Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0886 ATGGAGAAAGTACCTGAGATTGAAGATCCTGCTGATGCCGAGCCACCACCTTTATCTCCGTCAAGTCCTGATGTGTCGCCTAGTATAGAAACAGTAGAAGCCGATCCTATAAAGTTTTCTATCATCAGTAGGCAAGGGGTTGGGACTGCTGGAAAACGCATACCCGTGCTTACCAATCTCTTCAAAGTTTCCGTTAATGCTCCGGATGCGATTTTCTTCCAGTATAGTGTTACTATTGCTACGGAAGACAAAAGAGTCATCGAAAGCAAGGGCATTGGGAGAAAACTGATTGATAGGCTTTACCAAACATACTCTTCTGAACTTGGTGGCAAGAGGTTTGCATATGATGGTGATAGAACTTTATACACAGTGGGTCCTCTGCCACAGAATAAATTCGAGTTCAAAGTATTGCTTGAGGAATCGTTTGCAAAATCCAGTAGTGCTGAGTGTCCTGATGCTAATGGAAGCCCTCGTGGGGAAACTAAAAGGTCAAAATGTTCGTTTCAGTCAAAGGCTTTCATGGTGGATATAAGTTTTACTGCCAAAATACCCCTGCAGTCTGTTGCTCTTTCCCTTGAAGGGATGGGGACAGATGCTAATTGTCAGGATGCTTTGAGAGTGCTAGACACTGTGCTGAGGCAACAAGCAGCTAACAGAGGGTGTCTCTTGGTAAGACAATCTTTTTATCATGACGACTCGAGGAATTTCTCTGATGTTGGAGGTGGAGTAACAGGAGTTCGAGGGTTTCACTCCAGTTTTAATCTTAAACAGGGAGGATTATCTCTTAATATGGATGTGTCCACCACGGTCATCTTAAAACCTGGACCTGTAATTGATTTTCTCCTATCCAACCAGAATGTGAAAGAACCCCGTTATATTGACTGGGCAAAGGCCAAAAAAGTGCTTAAAAATTTAAGGGTGCTTGCAACACATCGTAAATGGGAATTTAAAATTTCTGGCTTGAGTGAGAAGCCCTGCATTCAGCAACTTTTTAGTATGAAGGTGAAAAATGGAGACAACAATGACGGAGAACAGACAGTAGATATTACTGTATATGAGTATTTTGCTGAACACTGTGGCATAGAGCTGACTTCTTCTGCTTATCTTCCATGTCTTGATGTGGGGAAGCCAAATCGTCCCATCTATTTGCCCTTGGAGCTTTGTTCACTTGTTCCCCTCCAACGATATAAAAAGGCATTATCTCCCGTGCAAAGAGCATCTTTGATTGAAAAATCACGCCAAAAGCCGCAAGATAGAATCAAGTCTCTGAGAAATGCTGTTGAAGATTATCACTACGATGATGACCCTGTTCTTGCTGCATGTGGCATTTCTATTGATAAACAATTGACTCAGGTTGAAGCTCGGGTACTTGAGACACCAAAGTTGAAGGTCGGTAAGAATGATGACTGCATTCCCCAAAATGGAAGGTGGAACTTTAATAAGAAGACATTTCTACAACCATCACGTATTGATTTTTGGGCTGTTGTTAATTTTTCTGCCCGTTGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAAGGCATTAACATTGAACGGCCATATACTTTAATAGAGGAAGACGCACCCATGAAAAAATCTAATCCTGTTGCAAGGGTTGAAAAGATGTTTGACCTACTTACATCAAAACTTATTAGAGAACCAAAGCTGATTCTCTGTGTTTTGCCAGAGAAGAAAAATTGTGACATTTACGGGCCTTGGAAAAAGAAGTGTCTGAGTGAATTTGGTGTTGTCACACAGTGTATTTCCCCTCTGAAGATCACTGATCAATACCTTACTAATGTACTACTTAAAATCAATTCTAAGCTTGGAGGAATAAACTCTTTACTGACAATAGAGCTTTCCGGGAATCTTCCCCTAATTGAAGATACTCCAACAATGATTTTGGGGATGGATGTGTCTCATAGTTCCCCTGGTCAGTCAGATGTTCCATCAATAGCAGCGGTTGTTGGATCTCGTCTTTGGCCTCTGATTTCAAGGTATAGAGCATCTGTGAGAACGCAATCATCTAAAGTGGAGATAATTGATGCTCTTTACAAGCCTTTGGATGGTGGGAAAGATGATGGTATTATCAGAGAATTGCTTCTAGATTTCTATGAATCAAGTAATGGTCGCAAACCAGCTCAAATTATCGTGTTCAGGGATGGAGTCAGTGAATCACAGTTTAATCAGGTTCTGGATATTGAGGTTAACCAGATTATAAAGGCCTATCAACATCTTGGAGAGGTTGATGTTCCCAAGTTCACAGTAATTGTGGCGCAGAAGAATCATCATATAAAGCTTTTTCAAGCTAATTCTGTGGATAATGTTCCTCCTGGAACGGTTGTCGACACAAAAATCGTGCATCCAAGAAATTACGATTTCTACTTGTGTGCTCATGCTGGGATGATTGGCACATCTCGGCCTGTACATTATAATGTGTTGCTCGATGAGATTGGTTTCTCTCCGGATAGCTTGCAAAATTTAATCCATTCACTGTCTTATGCAAACCAAAGGAGCTCCATTGCAACCTCAATTGTGGCACCTATACACTATGCCCACCACGCTGCAGCTCAGATGAGACAAGTTTTGAATTTTGATAATTTATCAGAAACATCTTCAAATCTTGATTCAGAGGGAGTCGTCTCCATTCCCGAGCTACCAAGGTTGCATAGCAATGTCAAGAGTACCATAATCTGA 2712 0.4122 MEKVPEIEDPADAEPPPLSPSSPDVSPSIETVEADPIKFSIISRQGVGTAGKRIPVLTNLFKVSVNAPDAIFFQYSVTIATEDKRVIESKGIGRKLIDRLYQTYSSELGGKRFAYDGDRTLYTVGPLPQNKFEFKVLLEESFAKSSSAECPDANGSPRGETKRSKCSFQSKAFMVDISFTAKIPLQSVALSLEGMGTDANCQDALRVLDTVLRQQAANRGCLLVRQSFYHDDSRNFSDVGGGVTGVRGFHSSFNLKQGGLSLNMDVSTTVILKPGPVIDFLLSNQNVKEPRYIDWAKAKKVLKNLRVLATHRKWEFKISGLSEKPCIQQLFSMKVKNGDNNDGEQTVDITVYEYFAEHCGIELTSSAYLPCLDVGKPNRPIYLPLELCSLVPLQRYKKALSPVQRASLIEKSRQKPQDRIKSLRNAVEDYHYDDDPVLAACGISIDKQLTQVEARVLETPKLKVGKNDDCIPQNGRWNFNKKTFLQPSRIDFWAVVNFSARCDTSYITRELIKCGMSKGINIERPYTLIEEDAPMKKSNPVARVEKMFDLLTSKLIREPKLILCVLPEKKNCDIYGPWKKKCLSEFGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLTIELSGNLPLIEDTPTMILGMDVSHSSPGQSDVPSIAAVVGSRLWPLISRYRASVRTQSSKVEIIDALYKPLDGGKDDGIIRELLLDFYESSNGRKPAQIIVFRDGVSESQFNQVLDIEVNQIIKAYQHLGEVDVPKFTVIVAQKNHHIKLFQANSVDNVPPGTVVDTKIVHPRNYDFYLCAHAGMIGTSRPVHYNVLLDEIGFSPDSLQNLIHSLSYANQRSSIATSIVAPIHYAHHAAAQMRQVLNFDNLSETSSNLDSEGVVSIPELPRLHSNVKSTII* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0886 903 Pfam Argonaute linker 1 domain 224 271 IPR014811 -
Lja6g0886 903 Pfam Piwi domain 561 868 IPR003165 GO:0003676
Lja6g0886 903 ProSiteProfiles PAZ domain profile. 299 392 IPR003100 GO:0005515
Lja6g0886 903 PANTHER PROTEIN ARGONAUTE 6 34 901 - -
Lja6g0886 903 SMART DUF1785_2 222 274 IPR014811 -
Lja6g0886 903 Gene3D - 456 622 - -
Lja6g0886 903 Gene3D paz domain 268 396 - -
Lja6g0886 903 Gene3D - 628 902 IPR036397 GO:0003676
Lja6g0886 903 Pfam PAZ domain 278 408 IPR003100 GO:0005515
Lja6g0886 903 Pfam N-terminal domain of argonaute 52 212 IPR032474 -
Lja6g0886 903 SUPERFAMILY Ribonuclease H-like 552 869 IPR012337 -
Lja6g0886 903 Pfam Argonaute linker 2 domain 418 463 IPR032472 -
Lja6g0886 903 SMART PAZ_2_a_3 275 414 IPR003100 GO:0005515
Lja6g0886 903 ProSiteProfiles Piwi domain profile. 561 869 IPR003165 GO:0003676
Lja6g0886 903 SMART Piwi_a_2 561 869 IPR003165 GO:0003676
Lja6g0886 903 MobiDBLite consensus disorder prediction 1 27 - -
Lja6g0886 903 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 34 901 - -
Lja6g0886 903 CDD PAZ_argonaute_like 274 391 - -
Lja6g0886 903 SUPERFAMILY PAZ domain 269 431 IPR036085 GO:0005515
Lja6g0886 903 CDD Piwi_ago-like 436 866 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0886 Lja-Chr6 19553803 19562848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0886 26 865 Eukaryotic Initiation Factors Gene Family AT1G48410 37.686 4.80e-160 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0886 K11593 - gmx:100778875 1391.33