Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0884 ATGCGGTTCATCGACCACGGCATGGACCTCGACCTGGACCTGGACCTTGACCTCTCTGATTTCGGTTCGTCGGTGCCGCTCAAGAAGGTCCCTAACGGCGACATCTTCTCCGCGTCCCGTGCGGGTGACGTGGACCGCCTCCGGTACCTTCTCGAGTCCGGCGTCGACGTCAACGCCCGCGACCAGTGGGACTCCGTCGCCCTCTACTACGCTTGCCTCGCCGGCCACCTCGACGCCGCCCGCATGCTCCTCGAGAGCGGCGCCATCTGCTCCGAACACACTTTCGACGGTGACCGTTGCCACTACGCCGCTCTCAACTTGAAGGTCCGTAAACTCCTCAAGGCCTTTGAAGCTCGCCCTCCTCCCTTGGACCCCTTGCCCTCCTCCTTGCGTCTCACCTTCTTGTCCTGCCCCGCTAACTCCTCTGCCTCTCCATTTCCCAGTATTTCATCCACTCAAGGGTCAAGTGGCTGCAGCCACTTTCCTCCTGATGTGGTTTTCACCGTGCAAGGAGAACCTATTGAAGCTCACAGAGTCATATTAAGTGCAAGGTCACCATATTTCAAGAAAAAGTTCGAGACTGATTGGAAAGAGCGCAGCGAGGTTAGATTCTCGCGGGAGAAGTTGTCATATCCCGCGCTTTATAGCCTCGTACACTTCTTCTATTCAGACAGGTTGGAGATTGCTGTGGATGACATGGAAGATCTTGTGAGAATATGCAAAGTGTGCAAATGCGAATCACTAAGGAGTGTTCTTGAGAAAGAAATAGTTCATCAAAAGTATGCGGATTATAAAGCTCTGCGAGATGTGGACAATTCTCAGAAACGGTATATTTTGCAGGGCCTGTCCCTTCCTGAAGAAGACAGGCTTCCTGCAGCCTTGCGTCGAATCCTTCTGACCGCCCTTTCAAATTCCAGCCATGAAAATGGTCAAGATGATGGAATTGATAATGCGGTATCTAGGATGGGTGCCATGCAGATGGATGATGATCTTGCTGATGTTTGTGTGAGAGTCGACAGGAAAATTTTCCGTTGCCATAAAGTTATTCTAGCTTCAAGGTCAGAATATTTTAAAGCAAGGCTGTCTCGTATGGAGGATTTCCATGAAGGGAAAGATGCCTTATCTGTTGACTTCCTTCCTTGTATTGAGGAACATGACTTGAGCACGGAAGCATTTGAGAAAATGATTGAATATATGTACACCGATGCTTTACAGGATATAAATCCAGATCAGGCTGAGGAGATGTTGGATGTTGCTTCTAGATACTTACTGTTTCCTCTTAAGCGTGCGGTAGCTGATGTCTTGTTGCCACACTTGGAAATGGTGTCGCCTGAGGAGCTTTGCCACTGGTTAATGCTAGCGGACATGTATGGTGTTTTCAAGATTCGGGAATATTGTTTAGACACCGTTGCTTGTAATTTTGAAACATTTGCTGATACTAAAGAATTCCGGGCAATGCTGTTGACTCTGCCTCCACCATCAGGCGACTCATCTCTTCGTACCACTGTTCCAAGCATTCCTGGATCTGCTCTAAATACTGATCAAGGAAATCTTCTTGATGATTTACGTGAGAAATGGCTTGAAATTGAAGCTGCTGAGCTTGACAAGAGAGATGAGAGTGCTTTGCAATTTGACAAGCGCCTAGAAATGCTTATGCTTGTTGCAGAGCAAGAAAAATCATCAGAGAATGCTGATCCAGATGGTATTAATAACTCACACCCTTGGCTATCTCCTCAATCACCACTCTAA 1749 0.482 MRFIDHGMDLDLDLDLDLSDFGSSVPLKKVPNGDIFSASRAGDVDRLRYLLESGVDVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLDPLPSSLRLTFLSCPANSSASPFPSISSTQGSSGCSHFPPDVVFTVQGEPIEAHRVILSARSPYFKKKFETDWKERSEVRFSREKLSYPALYSLVHFFYSDRLEIAVDDMEDLVRICKVCKCESLRSVLEKEIVHQKYADYKALRDVDNSQKRYILQGLSLPEEDRLPAALRRILLTALSNSSHENGQDDGIDNAVSRMGAMQMDDDLADVCVRVDRKIFRCHKVILASRSEYFKARLSRMEDFHEGKDALSVDFLPCIEEHDLSTEAFEKMIEYMYTDALQDINPDQAEEMLDVASRYLLFPLKRAVADVLLPHLEMVSPEELCHWLMLADMYGVFKIREYCLDTVACNFETFADTKEFRAMLLTLPPPSGDSSLRTTVPSIPGSALNTDQGNLLDDLREKWLEIEAAELDKRDESALQFDKRLEMLMLVAEQEKSSENADPDGINNSHPWLSPQSPL* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0884 582 ProSiteProfiles BTB domain profile. 163 230 IPR000210 GO:0005515
Lja6g0884 582 SUPERFAMILY Ankyrin repeat 36 114 IPR036770 -
Lja6g0884 582 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 8 555 IPR044515 -
Lja6g0884 582 SUPERFAMILY POZ domain 317 438 IPR011333 -
Lja6g0884 582 ProSiteProfiles BTB domain profile. 332 408 IPR000210 GO:0005515
Lja6g0884 582 Gene3D Potassium Channel Kv1.1; Chain A 306 471 IPR011333 -
Lja6g0884 582 Gene3D Potassium Channel Kv1.1; Chain A 143 278 IPR011333 -
Lja6g0884 582 CDD BTB_POZ_ZBTB_KLHL-like 331 422 - -
Lja6g0884 582 MobiDBLite consensus disorder prediction 564 582 - -
Lja6g0884 582 CDD BACK 443 486 - -
Lja6g0884 582 SUPERFAMILY POZ domain 145 257 IPR011333 -
Lja6g0884 582 Pfam Ankyrin repeats (many copies) 35 84 IPR002110 GO:0005515
Lja6g0884 582 SMART BTB_4 163 260 IPR000210 GO:0005515
Lja6g0884 582 SMART BTB_4 332 439 IPR000210 GO:0005515
Lja6g0884 582 Pfam BTB/POZ domain 329 435 IPR000210 GO:0005515
Lja6g0884 582 Pfam BTB/POZ domain 162 259 IPR000210 GO:0005515
Lja6g0884 582 Gene3D - 35 120 IPR036770 -
Lja6g0884 582 ProSiteProfiles Ankyrin repeat profile. 38 62 IPR002110 GO:0005515
Lja6g0884 582 MobiDBLite consensus disorder prediction 557 582 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja6g0884 BTB 9.3e-17 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0884 K10520 - gmx:100812009 928.317