Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0881 ATGGCTGCGTCGCTTCACCCAGATAAGAATAAATGTGTTGGAGCTGATGGGGCATTTAGTCTTGTTTCTGAGTCATGGGTCTCGCTTTCAGGAAGTTCTGTGACCGGTTCTTGTGATCTCAAGAGAAATGCAAGATTGGGTGCTGCGATTAGAAAACGTTCCAATTTGTCAACCTCTGGTGGTAATCGAGATACATTCTGGACAGTTTGCAACACTTGTAAGGTTCAGTATGAGTATCTGCGAAAGTATGTAAATAAAAAACTTTCTTGTAAGAATTGCCGAGGCACTTTCACTGCTTTTGAAACAGGAGCAGGACCGCCAAATGGTTCATACCCGTATAGTCCTTGGTCATATATGCCTGGCAAAGGGCATGGAAGCCATTCATTTGATAGAGTTACATATCTTCCAACTAGTGGCGCCTACTTCTCTGGCAAACGGGTCACGGGATACCATTCAGGACATGGATATGAGTATGTTTCAAATGTTCCATATCAGGGAAGCTCTTCTGGATTTGTCAATCAAAATGGATTAACTACCTTAAGTGCTAATTCCGTTCAGCAGGCCAATGGGAATGTAAAGATGGGAAGACCGAAAGTTAAAACAGGAGCTGGTAGGAAGCATTACAGGACACAGAATCCGGTAAATACAAATTCTGATGTATCACCCTCTTTTAATGAACCACAGGAAGTTAAGCTTAGTAGACCTGAGAAGAAAAGGAAAGTTGTGGGAGCTAGTTGCAGAAATGGCCATGAAGAAAAGGCGTCAAAATGTGCTTCAGGATCAACATTGGCTAATGGAAATGAAAGCACTGGACATGGACAGAGGCTCTCCTGCAAAAGTGAAGTGCCAACCAAGCCGTATTCCATGGCACCAGCTTTTGATGCAAGAAAATTATTGATTGAGAAGGCCAGGACAGAAATAAGAAAGAAACTGGAAGAGATGAAGTTGGCATCTAAAACTGTTGCTGCTGTTAATGAGAGAGAAAAATCACAAGCTGAAGCTGGTCAAGTCAAAAGCGGTTCACATACAAACACAGTTCTGGATGTTTCTGGTAATCATTTCGAGCATGGGAAAATTGGTCCAGTCTCAATGACTGTCCCAGATCCTGACTTTCATGACTTTGACAAAGATAGGTCAGAAGAATGCTTCAGGCCTAAGCAAATATGGGCCTTGTATGATGAGGAAGATGGCATGCCTCGCTTGTATTGTCTTATCCGTGAGGTTATCTCTTTCAATCCATTTAAAGTTCATATTAGTTACTTGGGTTCAAAAACAGATAGTGAGTTTGGCTCAGTGAACTGGATTGATTCAGGTTTCACAAAATCATGTGGAAATTTTAGGGCCCTGCACTCTGATGTTGTTAATCAAGTTAACATTTTCTCTCATGTTCTAAGCCGCACGAAGGTTGGTCGAGGTGGTTGTATTCGCATGTATCCCAGCTGTGGAGATATTTGGGCTATTTACAGAAATTGGTCAACAGAATGGAACAGATCTACACCAGATGAAGTGAGGCATCAATATGACATGGTGGAGGTGCTGGATGATTACTCTGAGGAGCTCGGTGTTTGTGTTAGTCCCCTTATTAAGTTGGATGGGTTCAAAACAGTATATAAGAGGAACACTGACAAATGTGTGATTCGATGGATCCCAAGAAGAGAAATGTTGTGCTTTTCACACCAAGTACCTTCATGGCTGCTGAAGGGGGAAGAGGCTTGCAATTTGCCGGAAAGGTGTTGGGACCTTGATCCTGCTGCAACTCCAGATGAGCTCCTTCAAGCTGCTACTGAAGCAAACATTTCATAG 1803 0.4265 MAASLHPDKNKCVGADGAFSLVSESWVSLSGSSVTGSCDLKRNARLGAAIRKRSNLSTSGGNRDTFWTVCNTCKVQYEYLRKYVNKKLSCKNCRGTFTAFETGAGPPNGSYPYSPWSYMPGKGHGSHSFDRVTYLPTSGAYFSGKRVTGYHSGHGYEYVSNVPYQGSSSGFVNQNGLTTLSANSVQQANGNVKMGRPKVKTGAGRKHYRTQNPVNTNSDVSPSFNEPQEVKLSRPEKKRKVVGASCRNGHEEKASKCASGSTLANGNESTGHGQRLSCKSEVPTKPYSMAPAFDARKLLIEKARTEIRKKLEEMKLASKTVAAVNEREKSQAEAGQVKSGSHTNTVLDVSGNHFEHGKIGPVSMTVPDPDFHDFDKDRSEECFRPKQIWALYDEEDGMPRLYCLIREVISFNPFKVHISYLGSKTDSEFGSVNWIDSGFTKSCGNFRALHSDVVNQVNIFSHVLSRTKVGRGGCIRMYPSCGDIWAIYRNWSTEWNRSTPDEVRHQYDMVEVLDDYSEELGVCVSPLIKLDGFKTVYKRNTDKCVIRWIPRREMLCFSHQVPSWLLKGEEACNLPERCWDLDPAATPDELLQAATEANIS* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0881 600 MobiDBLite consensus disorder prediction 230 254 - -
Lja6g0881 600 MobiDBLite consensus disorder prediction 187 283 - -
Lja6g0881 600 PANTHER BNAC03G44070D PROTEIN 1 593 - -
Lja6g0881 600 MobiDBLite consensus disorder prediction 208 228 - -
Lja6g0881 600 MobiDBLite consensus disorder prediction 258 277 - -
Lja6g0881 600 Pfam Domain of unknown function (DUF3444) 363 570 IPR024593 -
Lja6g0881 600 Coils Coil 300 320 - -
Lja6g0881 600 PANTHER BNAC03G44070D PROTEIN 1 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0881 Lja-Chr6 19463398 19466245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0881 1 214 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 28.821 4.58e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0881 - - gmx:100788692 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0881 6 19463398 19466245 Lja6g0881 6 19463398 19466245 ECH