Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0880 ATGGGTCGCTGCCGAGCTGCGTCGCGCTCCGCCGATGATGACCCGAGGTCAAAGAAGAAAAAGGCTACTTTGAATGTGGAGAATTTAGAGACTTCATCTGCAGGCCAAGAAATATCTGATGGCAAGGCATCTCTGTATCACTGTAATTATTGCCACAAAGATATTTCAGGGAAGATTCGCATAAAGTGTGCTGTCTGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCTGTCGGTGTAGAAGTGACACCTCACAAATGTAATCATCCATATCGAATTATGGATAATCTATCGTTTCCACTTATATGTCCAGATTGGAATGCAGATGAAGAGATGTTACTTCTAGAGGGTATTGGAACGTATGGATTTGGGAATTGGAGTGAAGTTGCAGAATATGTAGGAACGAAAAGCAAAGCTCAATGTATTGACCACTATAATGCTGTATATATGAACTCACCCTGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAGAGAGGAACTCCTTGCCATGGCAAAGGAACATGAAGCCAAGAAAGAATTTCCTCCAACAGCAGAGCTTACTTTGAAAGAGGAAGCACCCTTCTCTGATGGGATAAACTCTGAAGAATCTACGAAGGTAGGAACCACTAATCAAACAATGTCTAGGTTAACCTCAGCACGTGACAAAGCTTATTCAAGTGCAATTAAAATGGCTTCCAAGATGAGCCAGAATAATGATGGAGTCAAGGTGGAAGTCGAACATCAGGCTGGTCGGAGTATTGGAGAGAAGAAACCTAAATTTTCAGGGGAAGATAGGCCTTATATGACAGAGTTTAGTGGATACAATTTTAAGAGAGAGGAATTTGAAATTGAATACGATAATGACGCAGAACAAGTACTGGCAGATATGGAATTTAAGGACACTGATACTGAAGCTGAATGTGAAACAAAACTGCGTGTGCTCCATATCTACTCAAAAAGGTTAGATGAACGAAAACGCAGGAAGAATTTTATACTTGAAAGAAATTTACTTTGTCCTGATCCTTTTGAAAAATCTCTCTCACCTGAAGAGCTTCAAATATGTCAGCGCTACAAGGTCCTCATGAGGTTTCAATCGGATGAACAACATCGGGAGTTGCTAAAAAATATTATTGAAGAACATCGACTTGTCAAAAGAATTCAAGATTTACAGGAAGCTCGACTTGCCGGCTGTGTAACTGCAGCTAAAGCTCAGGAATTTATTGAACACAAGAGGACAAAGGAAGCTGAAGAAAAGGGCTGCAAAGGAATTGGTCATATTGGAACTGGTGCTAAGACGTTACAGAAGTCAAATTATCTCAAAGGAGAGCTTGATAGTAGCCTACAAGGTCTTCACAAGGATTCACGACCAACTGTCATGGAGGCTATCACAAGGTCGCTTGAAGAATGGGATATCAGTGGATTTGAAGGGGCTGAATTATTATCTGAATCTGAGAAAAAGCTTTGTAACGAGAACAGAATTCTTCCATCACACTACCTCAAGATGCTGCAGATCATGTCATTAGAAATTTCAGAGGGCAGAGTAACTAACAAATCTGATGCACATAGACTGTTCAAGGTAGAGCCAAGCAAGGTTGATAGAGTTTACGACATGCTTGTGAAAAAGCAAGGTTGA 1644 0.4075 MGRCRAASRSADDDPRSKKKKATLNVENLETSSAGQEISDGKASLYHCNYCHKDISGKIRIKCAVCQDFDLCIECFSVGVEVTPHKCNHPYRIMDNLSFPLICPDWNADEEMLLLEGIGTYGFGNWSEVAEYVGTKSKAQCIDHYNAVYMNSPCFPLPDLSHVMGKSREELLAMAKEHEAKKEFPPTAELTLKEEAPFSDGINSEESTKVGTTNQTMSRLTSARDKAYSSAIKMASKMSQNNDGVKVEVEHQAGRSIGEKKPKFSGEDRPYMTEFSGYNFKREEFEIEYDNDAEQVLADMEFKDTDTEAECETKLRVLHIYSKRLDERKRRKNFILERNLLCPDPFEKSLSPEELQICQRYKVLMRFQSDEQHRELLKNIIEEHRLVKRIQDLQEARLAGCVTAAKAQEFIEHKRTKEAEEKGCKGIGHIGTGAKTLQKSNYLKGELDSSLQGLHKDSRPTVMEAITRSLEEWDISGFEGAELLSESEKKLCNENRILPSHYLKMLQIMSLEISEGRVTNKSDAHRLFKVEPSKVDRVYDMLVKKQG* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0880 547 SUPERFAMILY Homeodomain-like 99 152 IPR009057 -
Lja6g0880 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 153 IPR017930 -
Lja6g0880 547 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 4 545 - -
Lja6g0880 547 CDD ZZ_ADA2 46 94 IPR041983 -
Lja6g0880 547 SUPERFAMILY RING/U-box 46 109 - -
Lja6g0880 547 Pfam Zinc finger, ZZ type 46 78 IPR000433 GO:0008270
Lja6g0880 547 ProSitePatterns Zinc finger ZZ-type signature. 48 75 IPR000433 GO:0008270
Lja6g0880 547 ProSiteProfiles SWIRM domain profile. 464 547 IPR007526 GO:0005515
Lja6g0880 547 Pfam Myb-like DNA-binding domain 105 146 IPR001005 -
Lja6g0880 547 PIRSF Txn_adaptor_ADA2 33 547 IPR016827 GO:0003713|GO:0006357|GO:0035065
Lja6g0880 547 ProSiteProfiles SANT domain profile. 101 153 IPR017884 -
Lja6g0880 547 SUPERFAMILY Homeodomain-like 456 545 IPR009057 -
Lja6g0880 547 CDD SANT 106 146 IPR001005 -
Lja6g0880 547 SMART sant 102 151 IPR001005 -
Lja6g0880 547 Gene3D - 39 94 IPR043145 -
Lja6g0880 547 SMART zz_5 42 87 IPR000433 GO:0008270
Lja6g0880 547 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g0880 547 ProSiteProfiles Zinc finger ZZ-type profile. 43 99 IPR000433 GO:0008270
Lja6g0880 547 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 4 545 IPR034318 GO:0003713|GO:0006357|GO:0035065
Lja6g0880 547 Gene3D - 100 151 - -
Lja6g0880 547 ProSiteProfiles Myb-like domain profile. 106 149 IPR001005 -
Lja6g0880 547 Gene3D - 473 545 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0880 Lja-Chr6 19449019 19459672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0880 1 545 EF-hand Containing Proteins AT3G07740 55.098 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja6g0880 Myb_DNA-binding 9.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0880 K11314 - gmx:100779424 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0880 6 19449019 19459672 Lja6g0880 6 19449019 19459672 ECH