Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0872 ATGAATGAGGAAATCAAGTCAGAATTCAGAAAAAGCGGGTTCCATCTCAACAAAGAAGAAGAAGAAGAAGAATTACTCAGCAAATGTGTCACTTTCTGTATCAACTACACTCTCACCCCTTCCGATCTCGTCTCAAGCTGGGAGGTTTACTACCTCAATAGGCAGCTCAATGAACCAACGCTGCAAAATGTTGAAATGGACGGTTTTCTGATGCATCTTCAAAATAATATCAAACAAGATGTTTTAATGGAGGAACCTGCTTGGCATACTTACTCTATCAAAGATGTACAAATGATCTTAAATAATGATGATGATAAAAAGGACAATACTCCTGGAACGCCAACGGATCATCAACGAGATTTTTGTTCACCTGCACTTGATACACCATCTTCAATGTATGAAAATGCCTCATATTCTGGAAAACCATCAAATCTAGTGACGCCCTTTTCAAAGCGAACAGATAGGTTTGCAGTGAAAGTTAGCATCAATACCATCCCTGATGTAGAGAATGGGAAACAAGAACCTAATCATAACAACGCTGAGAATGACGAGGACAATGTTGATAGGAAAGTTCTTCCCCGTGAAAGGTGTTCATTGGTGGTTCACGGATCAGGGCCCGAACCTGATTGCAGGTTCATGTATGATCGGATTGAGGATAGGGTTAATGCAGTAGAAAATCGGATTAGGAAACATGCAAGAGCATTTGTAACTTCTAGGCTCTATGAAGAACTTGCAGATCCTACAATTGCTTCGCAGAGAATCATTTTTGCTGTTGGCATGATTTGTTGTGATGGAGAAGGCCGACTAAATGAGAAGTCAGTCATGCTGCAGAGCAGTATGGAGCACTCTGGAGGGGAATGTGTTCGCCTAGACTTACAACATTTAAGCCACTTTTCAGTTTTTCCTGGCCAGGTAGTTGGTATTGGAGGGCATAATCCTAGTGGGAATTGCTTAGTTGCATCCAAATTGGAGGATTCTGTACCTACTTCTGTTGCTGATGAGGATTTGAATCCTCCAAAGAAGCGAGCTATTGATAAGGAGAATCAGCCAACTGATCTGTTCAAATATATAATCCTTTGCATACTTCATTTCTCGGGCCCTTTTACTACAACAGACAATTTGTTGTTTGAGCCTCTTGTAGAACTACTTGCATATGCTAAGCGAAAACCGACACAGTTGCTTGTATTGCTGGGACCATTTATTGACTCGGAACACCCAGACATTAAGAAAGGGACAACGGATAGGAGTTTTGATGAAATATTTCATTTTGAAATCTTGAGGAAGTTGCAAGATTATGTAGAATGTATGGGTTCAGCAGCACGTGTTCTCCTTGTTCCATCTATACGTGATGCTAACCATGATTTTGTTTTTCCTCAGCCTGCATTGGATATCAGTCTACCTGATCTCAAATCTCAGATAGTCAGTCTCGCTAACCCTGGACTCTTTGAAGCAAATGAGGTCAAAGTTGGTTGCTGCACTATGGATATTCTCAAGCAGCTCAGTGGGGAGGAGATATCACGAACTGCAGCAGATGGAAAACCTGTTGATCGCTTGAGTAGACTTGCAAACCATATTCTTAACCAGCAAAGCTTTTATCCACTTTACCCGCCGGCAGAAAGTGTTCCATTGGACTCTTCTCTTGCTCCAGAAGCCCTTCAACTCTCTTTGATTCCAGATGTTCTTATCATACCTTCAGATATTAAGTATTTTGTGAAGGTGCTGAGTAGCGAACATGAAGGGATAGACCACGCGAAATGTGTGGCCGTCAATCCGGTAAGACTAGCCAAGGGAGAAGGAGGGGGTACTTTTGTAGAGCTCGATTACTGTGGAGGTTCCGATAAGATTAACGCTTCAGTTGTTGGCATATGA 1869 0.4184 MNEEIKSEFRKSGFHLNKEEEEEELLSKCVTFCINYTLTPSDLVSSWEVYYLNRQLNEPTLQNVEMDGFLMHLQNNIKQDVLMEEPAWHTYSIKDVQMILNNDDDKKDNTPGTPTDHQRDFCSPALDTPSSMYENASYSGKPSNLVTPFSKRTDRFAVKVSINTIPDVENGKQEPNHNNAENDEDNVDRKVLPRERCSLVVHGSGPEPDCRFMYDRIEDRVNAVENRIRKHARAFVTSRLYEELADPTIASQRIIFAVGMICCDGEGRLNEKSVMLQSSMEHSGGECVRLDLQHLSHFSVFPGQVVGIGGHNPSGNCLVASKLEDSVPTSVADEDLNPPKKRAIDKENQPTDLFKYIILCILHFSGPFTTTDNLLFEPLVELLAYAKRKPTQLLVLLGPFIDSEHPDIKKGTTDRSFDEIFHFEILRKLQDYVECMGSAARVLLVPSIRDANHDFVFPQPALDISLPDLKSQIVSLANPGLFEANEVKVGCCTMDILKQLSGEEISRTAADGKPVDRLSRLANHILNQQSFYPLYPPAESVPLDSSLAPEALQLSLIPDVLIIPSDIKYFVKVLSSEHEGIDHAKCVAVNPVRLAKGEGGGTFVELDYCGGSDKINASVVGI* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0872 622 MobiDBLite consensus disorder prediction 167 187 - -
Lja6g0872 622 Coils Coil 214 234 - -
Lja6g0872 622 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 620 IPR016722 -
Lja6g0872 622 PIRSF DNA_pol_alpha_2 1 610 IPR016722 -
Lja6g0872 622 Gene3D - 351 509 - -
Lja6g0872 622 Gene3D - 512 618 - -
Lja6g0872 622 Pfam DNA polymerase alpha/epsilon subunit B 364 572 IPR007185 GO:0003677|GO:0006260
Lja6g0872 622 Gene3D - 1 66 IPR043034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0872 Lja-Chr6 19397288 19401423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0872 2 622 Core DNA Replication Machinery Family AT1G67630 57.911 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0872 K02321 - gmx:100795306 927.546