Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0866 ATGGTCGAAGCTTCAAGGATCATGTACACCACCACTCTTCTTCCTAGCTTCACTCCAACAATTCACAAAACCCATCTAGGCCACCGTCACCTCACCGTGTCACGCAAGCACCAAGTTCAATGTTCAGTCTCTGCAAGCACAGATGGTGCCACACGAAGCCGAACCTCAGCCATTCCTTGGGGTTGTGATATGGATTCAGTAGAGAACGCTTCAGCTCTGCAGAAATGGTTGTCGCAGTCAGGGCTTCCACCGCAGAAGATGGGTATAGAAAAAGTGGATGTGGGAGAGAGAGGACTTGTTGCATTGAAGAATGTTAGGAAAGGGGAGAAGCTTCTCTTTGTGCCTCCCTCACTTGTCATTACTGCTGATTCTGAGTGGAGCTGCCTAGAAGCTGGTGAAGTTTTGAAAAAGAATTCAGTGCCAGATTGGCCACTGCTTGCAACTTACCTCATTAGTGAAGCTAGCCTCATGAAATCTTCAAGATGGTCAAATTATATATCAGCTTTGCCTCGTCAACCTTACTCACTTCTATACTGGTCACAAGAAGAACTGGATCGCTACTTGGAAGCTTCTCCGATTAGGGAGAGAGCAATTGAGAGGATTAATAATGTCATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACACTGATTTATTCCCTGAAGAGGTGTTCAACATGGAGTCTTTCAAGTGGTCATTCGGCATTCTTTTCTCTCGCATGGTTCGTTTGCCCTCAATGGATGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGATGTGGAGACATTTTTAGATTATGATAAACAGTCAAAGGGGATTGTCTTTACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTTTTTATTTCATATGGGAAAAAATCTAATGGGGAGCTTCTGTTATCATATGGATTTGTTACAAGGGAGGGTGCTAATCCTAGTGATTCAGTTGAGTTGTCACTATCACTCAAGAAATCTGATGGGTCCTACAAGGAGAAGTTAGAACTGCTGAAGAAGTATGGGTTATCAGGATCTCAGTGTTTTCCTATCCGAATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTACTTAGCTGTTAGCCCTTCAAGCATGAGAGGACAATTTGAGAAGATGGCTGCTGCAGCATCGAATAAAATTACTTCCACTAAGGACTTCAAATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGATAGCTGTGAATCCAGTATATCAAAATACAACAAGTTCTTACAGGCAAGTGGATCACTGGATTTGGATGTGACCTCTCCAAAACAACTCAATCGAAGACTCTTTCTAAAGCAGCTAGCTGTGGACTTGTGTACCAGCGAACGAAGGATATTATACCGTGCTCAATATATATTGCGAAGACAACTGAGGGATATGAGGGATGGTGAACTAAGGGCCTTCAAACTCTTTGATGGTGTCCGGAATTTTTTCAAATGA 1503 0.4298 MVEASRIMYTTTLLPSFTPTIHKTHLGHRHLTVSRKHQVQCSVSASTDGATRSRTSAIPWGCDMDSVENASALQKWLSQSGLPPQKMGIEKVDVGERGLVALKNVRKGEKLLFVPPSLVITADSEWSCLEAGEVLKKNSVPDWPLLATYLISEASLMKSSRWSNYISALPRQPYSLLYWSQEELDRYLEASPIRERAIERINNVIGTYNDLRLRIFSKYTDLFPEEVFNMESFKWSFGILFSRMVRLPSMDGKVALVPWADMLNHSCDVETFLDYDKQSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVTREGANPSDSVELSLSLKKSDGSYKEKLELLKKYGLSGSQCFPIRITGWPLELMAYAYLAVSPSSMRGQFEKMAAAASNKITSTKDFKYPEIEEQALQFILDSCESSISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILYRAQYILRRQLRDMRDGELRAFKLFDGVRNFFK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0866 500 CDD SET_RBCMT 84 315 IPR044431 GO:0016279|GO:0018022
Lja6g0866 500 SMART set_7 85 307 IPR001214 GO:0005515
Lja6g0866 500 PIRSF RMT_SET 4 497 IPR011192 GO:0009507|GO:0030785
Lja6g0866 500 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 11 295 - -
Lja6g0866 500 Pfam Rubisco LSMT substrate-binding 334 467 IPR015353 -
Lja6g0866 500 ProSiteProfiles SET domain profile. 85 301 IPR001214 GO:0005515
Lja6g0866 500 Gene3D set domain protein methyltransferase, domain 1 31 314 - -
Lja6g0866 500 Gene3D - 320 485 IPR036464 -
Lja6g0866 500 PANTHER - 11 295 - -
Lja6g0866 500 SUPERFAMILY SET domain 69 316 IPR046341 -
Lja6g0866 500 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 331 498 IPR036464 -
Lja6g0866 500 Pfam SET domain 97 301 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0866 72 270 NAC Transcription Factor Family AT3G56570 22.927 5.95e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja6g0866 SET 7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0866 - - gmx:100803319 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0866 6 19293403 19299553 Lja6g0866 6 19293403 19299553 ECH