Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0863 ATGGCTTCTAGAAAGCTCGATAACCCTCACTCCGGCGACGGTGCCAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAGGACACCACCTTGGATACGTTCGTGAAGTACTTTGAGAAATACGGAGAGATAACCGACTCTGTGATCATGAAGGATCGACACACGGGTCGACCCAGGGGATTCGGGTTCATCACGTATGCGGATCCTGCTGTTGTAGACCATGTCATTCAGGAGAATCATATCATCAATGGCAAACAGGTTGAGATCAAGAGGACTATTCCAAAGGGTTCTTCGCAATCGAATGACTTCAAGACGAAGAAGATTTTTGTTGGTGGTATTCCAACTTCAGTATCTGAAGACGAGCTTAAGGGCTTCTTCTCAAAATATGGGAAGGTTGTGGAGCACGAGATAATTCGCGACCACACCACGAAAAGGTCCCGGGGATTTGGGTTTATAGTTTTCGACAATGAGAAGGTTGTTGATACCATTTTAACTGATGGGAACATGATTGACATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCGAACTCTGGTTCTCTTCCTCCATTTGCTAGTGACTCTAGGCCACGTTCTTACAATGATGGTTTCAGTGGATTTGCTGATTCTTATGGGAGTTTTGGCAGTGGCGGTTATGGCCCTGGATCTTATAGGTCACTTTATGGTGGTAGGCTTGGTGATTATGGTGGTTATGGAACTGATGACTTCAGTGGTAGTTTTGGGAGCTATGGTGCTGGTGCTGGTTCTGGTGGCTATGCAGGCCGCTATGGAGAGTCATCTTTTGGATACTCAGGCCGCTATGGATCTTACATGGGCGGTCTTGGTGGTGGATATGGTGGTGGTGGGTTAGGCGCCTATGGAAGAGGTGGTGGGGCTTATGGAAGTTATGGTGGTCCAGGCACTGGTGAGGGTTTTGACGGCCCTGGTGCTGGTTATGGTGGGGCAGGAGGAGGAATGTATGCTGGTAGTAGGGCAGGTTATGGGGGCAGTAGCCGTTACCATCCTTATGCAAGATAG 1053 0.4862 MASRKLDNPHSGDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPAVVDHVIQENHIINGKQVEIKRTIPKGSSQSNDFKTKKIFVGGIPTSVSEDELKGFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDTILTDGNMIDMAGTQVEIKKAEPKKSSNSGSLPPFASDSRPRSYNDGFSGFADSYGSFGSGGYGPGSYRSLYGGRLGDYGGYGTDDFSGSFGSYGAGAGSGGYAGRYGESSFGYSGRYGSYMGGLGGGYGGGGLGAYGRGGGAYGSYGGPGTGEGFDGPGAGYGGAGGGMYAGSRAGYGGSSRYHPYAR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0863 350 Gene3D - 18 96 IPR012677 -
Lja6g0863 350 MobiDBLite consensus disorder prediction 180 202 - -
Lja6g0863 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Lja6g0863 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Lja6g0863 350 SMART rrm1_1 107 180 IPR000504 GO:0003723
Lja6g0863 350 SMART rrm1_1 19 90 IPR000504 GO:0003723
Lja6g0863 350 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 350 - -
Lja6g0863 350 SUPERFAMILY RNA-binding domain, RBD 93 190 IPR035979 GO:0003676
Lja6g0863 350 MobiDBLite consensus disorder prediction 186 202 - -
Lja6g0863 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Lja6g0863 350 Gene3D - 97 217 IPR012677 -
Lja6g0863 350 PANTHER OS08G0320100 PROTEIN 1 350 - -
Lja6g0863 350 SUPERFAMILY RNA-binding domain, RBD 12 98 IPR035979 GO:0003676
Lja6g0863 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0863 Lja-Chr6 19255296 19258645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0863 4 193 Eukaryotic Initiation Factors Gene Family AT1G71770 27.619 3.72e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0863 K12741 - gmx:100801373 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0863 6 19255296 19258645 Lja6g0863 6 19255296 19258645 ECH