Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0859 ATGGGTTATATGTGTGATTTTTGTGGGGACCAGAGGTCCATGGTGTACTGCCGCTCTGACGCTGCGTGCTTATGCTTGTCATGCGATCGAAATGTTCATTCCGCGAACGCCCTTTCAAGGCGGCATTCAAGGACCCTTTTATGTGAGAGATGCAATTCACAACCTGCCTTTGTAAGGTGCACTGAAGAGAAAGTTTCACTTTGTCAGAATTGTGACTGGGTGGGTCACGGTGCCTCTACATCTTCAACACATAAGAGGCAACCAATCAATTGCTACTCTGGATGCCCCGCAGCATCTGAGCTATCTTCTATATGGTCATTTGTGGATGATATCCCTTCTATGAGCGACTCTACATGTGAGCAAGAACTTGGTTTGATGAGTATTAATGAGAACCGTGGCGAGAATGGTTGGGTTCCTCCAGAAAACCAGAATGTGTCTGGTTCAGATCAAGGTACTGATTTACCTGGTTCGGATAAGCGCTGGATTGGTACATCTTCAAAGCCTGAGTTAAGCTCTGAACCTCGTGTTCAGGACCAGCCAGCTGGACCTTCAAATGAATATCTGCCAAAGTTATACTGTCATGCTACAAAATGCGCTTCAATACGTGAAGATGATGATCTGTATGGTGATTTCAACATGGATGAAGTCAATCTAAATTTTGAGAACTACGAAGAACTTTTTGGTATGGCCCTCACTCATTCTGAATCGCTTTTCGAAAATGGTGGATTTGATAGCTTGTTTGGGGAAAAGGATGTGTCTCCTGGAGATTCTAATTGTCAGGATGGTATTGCTGCAGAGGGGTCATACAATGGACAGGTCAATGCAGTGCAACCAGCATGCAGCAATACAGCATCTGCAGATTCCGCATGGAGCGCTAAGACCGAACCAATTCTGTGTTTTACGCCGAGGCATGGCCAATCAAACCTTTCATTTTCTGGCATTAATGAAGAGATCAGCGGCGGCGACCATCAAGATTGTGGGGCTTCTTCAATGCTTCCCATGGGAGAACCTCCGTGGTTTACACCTTGTTCTGAGAGTAACCAACATTCGGCCAACCGCAGTAATGCTGTCATGCGTTATAAGGAGAAAAAGAAGACACGCAAGTTCGACAAAAGAGTGAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTTCGAAGGCGCGAGAAGGGCCGGTTTGTGAAAGCCGGGGAAACCTATGATTATGACCCTTTGAGCCCAACCAGAAGCTACTGA 1233 0.4639 MGYMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCTEEKVSLCQNCDWVGHGASTSSTHKRQPINCYSGCPAASELSSIWSFVDDIPSMSDSTCEQELGLMSINENRGENGWVPPENQNVSGSDQGTDLPGSDKRWIGTSSKPELSSEPRVQDQPAGPSNEYLPKLYCHATKCASIREDDDLYGDFNMDEVNLNFENYEELFGMALTHSESLFENGGFDSLFGEKDVSPGDSNCQDGIAAEGSYNGQVNAVQPACSNTASADSAWSAKTEPILCFTPRHGQSNLSFSGINEEISGGDHQDCGASSMLPMGEPPWFTPCSESNQHSANRSNAVMRYKEKKKTRKFDKRVRYASRKARADVRRREKGRFVKAGETYDYDPLSPTRSY* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0859 410 MobiDBLite consensus disorder prediction 130 184 - -
Lja6g0859 410 MobiDBLite consensus disorder prediction 136 153 - -
Lja6g0859 410 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Lja6g0859 410 CDD Bbox1_BBX-like 47 89 - -
Lja6g0859 410 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Lja6g0859 410 MobiDBLite consensus disorder prediction 164 179 - -
Lja6g0859 410 CDD Bbox1_BBX-like 5 47 - -
Lja6g0859 410 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lja6g0859 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 410 - -
Lja6g0859 410 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lja6g0859 410 SMART bboxneu5 48 89 IPR000315 GO:0008270
Lja6g0859 410 Pfam CCT motif 353 395 IPR010402 GO:0005515
Lja6g0859 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0859 Lja-Chr6 19228361 19231643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0859 1 410 C2C2-CO-like Transcription Factor Family AT3G07650 55.425 5.17e-150 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lja6g0859 CCT 5.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0859 - - gmx:100796748 655.21